BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481903
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29960.1 | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | ... 1098 0.0
> AT2G29960.1 | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5
| chr2:12769033-12770579 REVERSE LENGTH=807
Length=807
Score = 1098 bits (594), Expect = 0.0
Identities = 670/706 (95%), Gaps = 8/706 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaCGATCACGAAGATGGCGAAAGCAAGCTCTATTCTACTTGGCACTCTCTT 60
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 30 AAAAAAAAAAACGATCACGAAGATGGCGAAAGCAAGCTTTATTCTACTCGGAACTCTCTT 89
Query 61 CCTCTTCGGAGCCATAGCTTTGATTCAGGCAAAAGAAGATCTCAAGGAAATTACTAACAA 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 90 CCTCTTCGGAGCCATAGCTTCAATTCAGGCAAAAGAAGATCTCAAGGAGGTTACTCACAA 149
Query 121 GGTTTACTTCGATGTAGAGATCGACGGCAAATCCGCTGGTCGCGTTGTTATAGG-CTTAT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 150 GGTTTACTTCGATGTAGAGATCGACGGCAAATCCGCTGGTCGCGTTGTTATAGGAC-TAT 208
Query 180 TTGGCAAGGCAGTTCCTAAAACTGCAGAAAACTTCAAAGCTTTGTGCACAGGGGAGAAAG 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 209 TTGGCAAGGCAGTTCCTAAAACTGCAGAAAACTTCAGAGCTTTGTGCACAGGGGAGAAAG 268
Query 240 GTGTTGGGAAGAGTGGGAAACCTCTACACTACAAGGGAAGCAAGTTCCATCGAATCATTC 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GTGTAGGGAAGAGTGGGAAACCTCTACACTACAAGGGAAGCAAGTTCCATCGAATCATTC 328
Query 300 CCAGCTTTATGATCCAGGGAGGGGACTTCACACATGGAAACGGTATGGGTGGAGAATCAA 359
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 329 CCAGCTTTATGATCCAGGGAGGTGACTTCACGCATGGGAACGGTATGGGTGGAGAATCAA 388
Query 360 TCTATGGTCAGAAGTTTGAAGATGAAAATTTCAAGCTGAAGCACACCGGACCAGGTTTGC 419
|||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| | |
Sbjct 389 TCTATGGTCAGAAGTTTGCTGATGAGAACTTCAAGCTGAAGCACACTGGACCAGGTGTAC 448
Query 420 TTTCGATGGCGAACTCGGGAGAAGACACAAATGGTTCGCAGTTTTTTATCACAACCGTGA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 449 TTTCAATGGCGAACTCGGGAGAAGACACAAATGGTTCGCAGTTTTTTATCACAACGGTGA 508
Query 480 CAACAAGCTGGTTAGATGGAAGGCATGTGGTGTTTGGGAAAGTGGTTCAAGGAATGGATG 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 509 CAACAAGCTGGTTAGATGGAAGGCATGTGGTGTTTGGGAAAGTGGTGCAAGGAATGGATG 568
Query 540 TAGTTTATAAGATTGAAGCGGAAGG-AAAGCAAAGCGGAACTCCTAAGAGCAAAGTCGTA 598
||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 569 TAGTTTATAAGATTGAAGCTGAGGGCAAA-CAAAGCGGAACTCCTAAGAGCAAAGTCGTA 627
Query 599 ATTGCAGACAGTGGAGAACTTCCTCTCTAAAAGAATATG-ATTTTAAAGTTACTCTTACG 657
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 628 ATTGCAGACAGTGGAGAACTTCCTCTCTAA--GAATA-GCATTTTAAAGTTACTCTTACG 684
Query 658 AGTTATTTATAATCTAAACACGTCCCAAATGCTAGAAGAACAGAAT 703
||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 685 AGTTAGTTGTAATCTAAACACGTCCCAAATGCTACAAGAACAGAAT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5