BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481908
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29990.1 | Symbols: NDA2 | alternative NAD(P)H dehydrogenase... 2313 0.0
AT1G07180.1 | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehy... 1280 0.0
> AT2G29990.1 | Symbols: NDA2 | alternative NAD(P)H dehydrogenase
2 | chr2:12793340-12795913 REVERSE LENGTH=1749
Length=1749
Score = 2313 bits (1252), Expect = 0.0
Identities = 1439/1528 (94%), Gaps = 18/1528 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTTGATCAAAAACCTCTCACGAATCTCACCAACTTCATCATCAATCGTCACCAGA 60
|||||| |||||||||||||| ||||||| ||||||| | ||||||||||| ||||||||
Sbjct 1 ATGTTCATGATCAAAAACCTCACACGAATTTCACCAAATACATCATCAATCATCACCAGA 60
Query 61 TTCCGAAGCACCGG------ATC---AT--T-CACTCTCGCTTCCCGTTTCTGCACAGCT 108
||| ||| | |||| ||| || | |||||||||||| ||||||||||||||
Sbjct 61 TTCAGAAACTCCGGATCATCATCATTATCATACACTCTCGCTTCTCGTTTCTGCACAGC- 119
Query 109 TC-AGAGACTCAGATTCAATCTCCGGCTAAAATTTCAAATGATGTGGATCAGAGTCAATA 167
|| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||
Sbjct 120 TCAAGAGACTCAGATTCAATCTCCAGCTAAAATTCCAAATGATGTGGATCGGAGTCAGTA 179
Query 168 TGCAGGTTTAG-CACCGACGAGAGAAGGAGAGAAACCGAGAGTGGTGGTTCTCGGGTCGG 226
| ||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 180 TTCAGGTTT-GCCACCGACGAGAGAAGGAGAGAAGCCGAGAGTAGTGGTTCTCGGGTCGG 238
Query 227 GTTGGGCGGGTTGTCGATTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTGGGCGGGTTGTCGATTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTG 298
Query 287 TTTCTCCGAGAAACCATATGGTTTTCACTCCTCTTCTTGCTTCTACTTGTGTTGGTACTC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTCTCCGAGAAACCATATGGTTTTCACTCCTCTTCTTGCTTCTACTTGTGTTGGTACTC 358
Query 347 TCGAATTTAGGTCTGTCGCTGAGCCTATCTCACGGATTCAACCTGCGATTTCTAGAGAGC 406
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 359 TCGAATTTAGGTCTGTTGCTGAACCTATCTCACGTATTCAACCTGCGATTTCTAGAGAGC 418
Query 407 CTGGTTCTTATTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGAGGCTCATGAGGTTC 466
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 CTGGTTCTTTTTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGATGCTCATGAGGTTC 478
Query 467 ACTGTGAGACTTTAACTGATGGCTTGAATACATTAAAGCCATGGAAGTTCAAGATTGCTT 526
| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 479 ATTGTGAGACTTTGACTGATGGATTGAACACATTAAAGCCATGGAAGTTTAAGATTGCTT 538
Query 527 ATGATAAGCTTGTGGTAGCTAGCGGTGCAGAGGCGTCAACGTTTGGAATCCATGGTGTCA 586
|||||||||||||| |||| || ||||||||||| || |||||||||||||||||||| |
Sbjct 539 ATGATAAGCTTGTGATAGCAAGTGGTGCAGAGGCTTCTACGTTTGGAATCCATGGTGTTA 598
Query 587 TGGAAAACGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 646
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGAAAATGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 658
Query 647 TTTTAAATCTGATGCTCTCTGATACTCCTGGCATATCGAAAGAGGAGAAAAAGAGGCTGT 706
|||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 659 TTTTGAATCTGATGCTCTCTGATACTCCTGGTATATCGAAAGAGGAGAAAAGGAGGCTGT 718
Query 707 TACATTGCGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGCGGTGAACTGAGTG 766
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TACATTGTGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGTGGTGAACTGAGTG 778
Query 767 ACTTTATCATGAAAGATGTTCGTCAACGATATTCCCATGTGAAGGACGACATTCATGTTA 826
||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 779 ACTTTATTATGAAAGATGTTCGTCAACGATATGCCCATGTTAAGGACGACATTCATGTTA 838
Query 827 CTTTGATAGAGGCCAGGGATATACTTTCATCTTTCGATGATCGTCTCAGACGTTATGCTA 886
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 839 CTTTGATAGAGGCCAGGGATATTCTTTCATCCTTCGATGATCGTCTCAGACGTTATGCTA 898
Query 887 TAAAGCAGTTGAACAAGTCTGGAGTGCGGTTTGTGCGTGGCATTGTGAAAGATGTGCAGT 946
| |||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 899 TCAAGCAGTTAAACAAGTCTGGAGTACGGTTTGTGCGAGGGATTGTGAAAGATGTGCAGT 958
Query 947 CTCAGAAGCTAATACTTGACGATGGCACAGAAGTTCCCTACGGACTCTTAGTGTGGTCCA 1006
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 CTCAGAAGTTAATACTTGACGATGGCACAGAGGTTCCCTACGGACTCTTAGTGTGGTCCA 1018
Query 1007 CTGGTGTTGGTCCTTCCTC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCTACTGGA 1065
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGGTGTTGGTCCTTC-TCCTTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCTACTGGA 1077
Query 1066 AGGATTGGCATTGACGAATGGATGCGTGTACCTTCTGTACAAGACGTGTTTGCCATTGGT 1125
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1078 AGGATTGGCATTGACGAATGGATGCGTGTACCTTCAGTGCAAGACGTGTTTGCCATTGGT 1137
Query 1126 GACTGCAGCGGATATCTGGAGACCACCGGAAAACCAACCCTTCCTGCTCTCGCTCAGGTA 1185
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1138 GACTGCAGCGGATATCTGGAGACCACCGGAAAACCGACTCTTCCTGCTCTAGCTCAGGTA 1197
Query 1186 GCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGAGATTGGGAAAGCCAATGGA 1245
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 1198 GCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGCGATCGGGAAAGGCAATGGA 1257
Query 1246 GGACGGGCCAACAGCGCAAAGGAGATAGAACTTGGAGCTCCATTTGTGTATAAGCACCTT 1305
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1258 GGACGAGCCAACAGCGCAAAGGAGATAGAACTTGGAGTTCCCTTTGTGTATAAGCACCTT 1317
Query 1306 GGAAGCATGGCTACGATCGGTAGATACAAAGCACTAGTCGACCTTCGCGAGAGCAAGGAC 1365
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1318 GGAAGCATGGCTACTATCGGTCGATACAAAGCCCTAGTCGACCTTCGCGAGAGCAAGGAC 1377
Query 1366 GCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGGTCGGCGTATCTG 1425
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1378 GCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGATCGGCGTACCTG 1437
Query 1426 ACTCGAGTCGTAAGCTGGAGAAACCGATTCTATGTCGCCATCAACTGGTTCACCACTTTC 1485
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 ACTCGAGTCATAAGCTGGAGAAACCGATTCTATGTCGCTATCAACTGGTTCACCACTTTC 1497
Query 1486 GTCTTCGGTCGTGACATTAGCCGTATCT 1513
|| || ||||||||||||||||||||||
Sbjct 1498 GTTTTTGGTCGTGACATTAGCCGTATCT 1525
> AT1G07180.1 | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehydrogenase
1 | chr1:2204320-2206934 FORWARD LENGTH=1788
Length=1788
Score = 1280 bits (693), Expect = 0.0
Identities = 1143/1360 (84%), Gaps = 32/1360 (2%)
Strand=Plus/Plus
Query 172 GGTTTAGCACCGACGAGAGAAGGAGAGAAACCGAGAGTGGTGGTTCTCGGGTCGGGTTGG 231
||||| || ||||||| ||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 284 GGTTTGGCTCCGACGAAAGAGGGAGAGAAGCCGAGAGTTTTGGTTCTCGGGTCGGGTTGG 343
Query 232 GCGGGTTGTCGATTGA-TGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTGTTTC 290
||||||||||| | | | |||||||||||||| | | | ||||||||||||||||| ||
Sbjct 344 GCGGGTTGTCGGGT-ATTAAAAGGGATCGATACTAGTATTTACGACGTCGTTTGTGTCTC 402
Query 291 TCCGAGAAACCATATGGTTTTCACTCCTCTTCTT-GCTTCTACTTGTGTTGGTACTCTCG 349
||| || ||||| ||||| |||||||||| |||| ||||||||||| |||||||| || |
Sbjct 403 TCCTAGGAACCACATGGTCTTCACTCCTC-TCTTGGCTTCTACTTGCGTTGGTACGCTTG 461
Query 350 AATTTAGGTCTGTCGCTGAGCCTATCTCACGGATTCAACCTGCGATTTCTA-GAGAGCCT 408
| ||||||||||| ||||| || ||||| || || ||||| |||||||| | |||| ||
Sbjct 462 AGTTTAGGTCTGTTGCTGAACCAATCTCTCGTATCCAACCGGCGATTTC-ACGAGAACCC 520
Query 409 GGTTCTTATTTCTTCCTCGCTAATTGCTCTC-GTCTTGATGCTGAGGCTCATGAGGTTCA 467
|||||||||| |||||| ||||||||||| | ||||||||||| ||||||||| ||
Sbjct 521 GGTTCTTATTACTTCCTTGCTAATTGCTC-CAAACTTGATGCTGATAATCATGAGGTGCA 579
Query 468 CTGTGAGACTTTAACTGATGGCT-TGAATACATTAAAGCCATGGAAGTTCAAGATTGCTT 526
||||||||| ||||||| || | | | ||||| |||||||||||||||||||| ||||
Sbjct 580 TTGTGAGACTGTAACTGAGGGGTCT-AGCACATTGAAGCCATGGAAGTTCAAGATAGCTT 638
Query 527 ATGATAAGCTTGTGGTAGCTAGCGGTGCAGAGGCGTCAACGTTTGGAATCCATGGTGTCA 586
|||| || || || ||||| | |||||||| || || || |||||||| |||| |||
Sbjct 639 ATGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACATTTGGAATTAATGGCGTCT 698
Query 587 TGGAAAACGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 646
| |||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 699 TAGAAAACGCCATTTTCCTCCGTGAGGTTCACCACGCTCAGGAGATCCGTAGGAAGCTTC 758
Query 647 TT-TTAAATCTGATGCTCTCTGATA-CTCCTGGCATATCG-AAAGAGGAGAAAAAGAGGC 703
|| || || || ||||||||||| | ||| |||||| | |||| ||||| |||||||
Sbjct 759 TTCTT-AACCTCATGCTCTCTGA-AGTTCCAGGCATA-GGTGAAGATGAGAAGAAGAGGC 815
Query 704 TGTTACATTGCGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGCGGTGAACTGA 763
|||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||
Sbjct 816 TGTTGCATTGCGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGTTTAGTGGTGAATTGA 875
Query 764 GTGACTTT-ATCATGAAAGATGTTCGTCA-ACGATATTCCCATGTGAAGGACGACATTCA 821
|||| ||| |||||||||||||||||||| | ||||||| |||||||| ||||||||||
Sbjct 876 GTGA-TTTCATCATGAAAGATGTTCGTCAGA-GATATTCTCATGTGAAAGACGACATTCG 933
Query 822 TGTTACTTTGATAGAGGCCAGGGATATACTTTCATCTTTCGATGATCGTCTCAGACGTTA 881
||||||| |||| ||||| |||||||||||||| ||||| || ||||| || || | ||
Sbjct 934 TGTTACTCTGATTGAGGCAAGGGATATACTTTCTTCTTTTGACGATCGGCTAAGGCACTA 993
Query 882 TGCTATAAAGCAGTTGAACAAGTCTGGAGTGCGGTTTGTGCGTGGCATTGTGAAAGATGT 941
||| || |||||||| ||||||||||||||| | |||||||||| ||||||||||| ||
Sbjct 994 TGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGTGGGATTGTGAAAGAAGT 1053
Query 942 GCAGTCTCAGAAGCTAATACTTGACGATGGCACAGAAGTTCCCTACGGACTCTTAGTGTG 1001
| || ||||||||||||| ||||| |||||||| |||||||| ||||| | |||||| ||
Sbjct 1054 GAAGCCTCAGAAGCTAATCCTTGATGATGGCACTGAAGTTCCTTACGGTCCCTTAGTCTG 1113
Query 1002 GTCCACTGGTGTTGGTCCTTCCTC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCTA 1060
||| |||||||||||||| || || ||| || |||||||||| | |||| |||||||| |
Sbjct 1114 GTCAACTGGTGTTGGTCCATCTTCATTT-GTGAGGTCTCTTGATTTTCCTAAAGATCC-A 1171
Query 1061 -CTGGAAGGATTGGCATTGACGAATGGATGCGTGTACCTTCTGTACAAGACGTGTTTGCC 1119
|||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1172 GGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAGACGTGTTTGCA 1231
Query 1120 ATTGGTGACTGCAGCGGATATCTGGAGACCACCGGAAAACCAACCCTTCCTGCTCTCGCT 1179
||||||||||| ||||| ||||| |||| ||| || ||| |||| |||||||| || ||
Sbjct 1232 ATTGGTGACTGTAGCGGTTATCTCGAGAGCACAGGGAAATCAACACTTCCTGCACTTGCA 1291
Query 1180 CAGGTAGCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGAGATTGGGAAA-GC 1238
||||| |||||||||||||||||||||||||||||||| | || | ||| |||||| ||
Sbjct 1292 CAGGTGGCTGAGAGAGAAGGCAAATACTTGGCGAATCTGTTTAACGTGAT-GGGAAAAGC 1350
Query 1239 CA-ATGGAGGACGGGCCAACAGCGCAAAGGAGATAGAACTTGGAGCTCCATTTGTGTATA 1297
| |||||||||||||| ||||||||||| || || ||||| | |||||||||||||
Sbjct 1351 TGGA-GGAGGACGGGCCAATAGCGCAAAGGAAATGGAGCTTGGGGAACCATTTGTGTATA 1409
Query 1298 AGCACCTTGGAAGCATGGCTACGATCGGTAGATACAAAGCACTAGTCGACCTTCGCGAGA 1357
| || || ||||| |||||||| || || ||||||||||| || || || || || ||||
Sbjct 1410 AACATCTCGGAAGTATGGCTACTATTGGGAGATACAAAGCTCTCGTTGATCTCCGTGAGA 1469
Query 1358 GCAAGGACGCAAAAGGGATATCAATGACTGGTTT-CGTGAGCTGGTTCATATGGAGGTCG 1416
||||||| | ||||| ||||||||| | ||||| | ||||||||||||||||||||||
Sbjct 1470 GCAAGGAAGGGAAAGGAATATCAATGGCAGGTTTTC-TGAGCTGGTTCATATGGAGGTCT 1528
Query 1417 GCGTATCTGACTCGAGTCGTAAGCTGGAGAAACCGATTCTATGTCGCCATCAACTGGTTC 1476
|| ||||||||||||||||| |||||||||||||| ||||| || || ||||| ||| ||
Sbjct 1529 GCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTACGTTGCTATCAATTGGCTC 1588
Query 1477 ACCAC-TTTCGTCTTCGGTCGTGACATTAGCCGTATCTGA 1515
|| || ||| ||||| ||||| ||||||||||| ||||||
Sbjct 1589 ACTACCTTT-GTCTTTGGTCGGGACATTAGCCGAATCTGA 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5