BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481909

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G29995.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   444    4e-124


> AT2G29995.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant 
structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G07175.1); 
Has 14 Blast hits to 14 proteins in 3 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12796907-12799419 
REVERSE LENGTH=522
Length=522

 Score =  444 bits (240),  Expect = 4e-124
 Identities = 428/510 (84%), Gaps = 48/510 (9%)
 Strand=Plus/Plus

Query  1    GCCGGTGTGAGACTTTTTGTGGCGTCTACAAATATAAAAAGAGGTGA-ACgag--ag---  54
            ||||||||||||| |||||||||||||| |||||| | ||||||||| | |||  ||   
Sbjct  1    GCCGGTGTGAGACGTTTTGTGGCGTCTATAAATAT-ACAAGAGGTGAGA-GAGAAAGAAA  58

Query  55   ---ag--agag---aA-AATGGGTTA-T--TCATCGTCAAGATTTTGGTTATGTATGTTC  102
               ||  ||||   || ||||||||| |  ||||| |||||| || |||||||| |||||
Sbjct  59   AAAAGAAAGAGTAAAACAATGGGTTATTCATCATCCTCAAGAATTGGGTTATGTTTGTTC  118

Query  103  CTCTTCTTCACATTTGCT-TTCCTCTCTTCTGCTCGCATCAGTGTTTCATTTCCAGAAAA  161
            |||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||
Sbjct  119  CTCTTCTTCACATTTGCTCTTC-TCTCTTCTGCTCGCATCAGTCTTTCATTTTCAGAAAA  177

Query  162  TGAAATGACGGTGGTGCCAGAACGGTCATTGATGGTAAGCACCAACGACTACGGTGAGCC  221
            |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct  178  TGAAATGACGGTGGTGCCAGAACGGTCATTGATGGTGAGCACCAACGACTACAGTGACCC  237

Query  222  TTCAGCTAACGGTAGACACGATCCACCGCGTGGCGGCAGAA-ACCGCAGACGTT--GAGA  278
            | |||||||||||||||| |||||||| ||||| ||||||  || |||||||||  ||||
Sbjct  238  TACAGCTAACGGTAGACATGATCCACCCCGTGGAGGCAGAGGAC-GCAGACGTTAAGAGA  296

Query  279  GAGGATAACAATCTTATTTTCTTAAAATTTCCCAGCTCCTCTTGCTAA--TTGGCAAATA  336
            ||||||||   | || |   |||||  ||||| | |||||||||| ||  ||| ||||||
Sbjct  297  GAGGATAA---T-TT-T---CTTAAT-TTTCCGA-CTCCTCTTGC-AAGCTTG-CAAATA  344

Query  337  ATCTATATATATAGAAAGCAATAAAAGTA-TTTaaaaaaaaaaCGTGTTATATATGTAAT  395
            ||||||||||||||||| || |||||||| ||| |||||    || ||||||||||| ||
Sbjct  345  ATCTATATATATAGAAAACAGTAAAAGTAGTTTTAAAAA----CGAGTTATATATGTGAT  400

Query  396  ATCAGACTGT-TGACTTTGTAATATATAACACCTCGTTTGCATTTGTGTTCTTTCTACAT  454
            |||||| ||| ||  | |||||||||||| || || ||||||||||||||||  ||||||
Sbjct  401  ATCAGAGTGTGTGTGTGTGTAATATATAATACTTCATTTGCATTTGTGTTCT--CTACAT  458

Query  455  CGACTTGAACTTGTTATTTTTACCAAGATT  484
            |||||| ||||||||||| ||||| |||||
Sbjct  459  CGACTTCAACTTGTTATTCTTACCTAGATT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5