BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481915
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30050.1 | Symbols: | transducin family protein / WD-40 rep... 1862 0.0
AT3G01340.1 | Symbols: | Transducin/WD40 repeat-like superfami... 861 0.0
> AT2G30050.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:12824451-12826684 FORWARD LENGTH=1281
Length=1281
Score = 1862 bits (1008), Expect = 0.0
Identities = 1179/1260 (94%), Gaps = 17/1260 (1%)
Strand=Plus/Plus
Query 1 CTTAGCGTTTCCTTCTCCGGCGATCTTCTTCTTCTTCGACTCACATTGCATCGTCTCTCA 60
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 37 CTTAGCGTTTCCTTCTCCGGCGATATTCTTCTTCTTCGGCTCACATTGCATCGTCTCTCA 96
Query 61 CTCGATCCGTCGTGCGTTCAGGGACACTCATTTTGGAAACATGCCAGGCCAGAAGATTGA 120
|||||||| |||| | |||||||||| |||||| |||||||||||||| |||||||||||
Sbjct 97 CTCGATCCTTCGTTCTTTCAGGGACAATCATTTCGGAAACATGCCAGGTCAGAAGATTGA 156
Query 121 AACGGGTCATGAGGACATTGTCCATGATGTCCAAATGGATTACTATGGAAAGCGAATTGC 180
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 157 AACGGGTCATGAGGACATTGTCCATGATGTGCAGATGGATTACTATGGAAAGCGAATTGC 216
Query 181 AACTGCCTCATCTGACTGCACCATCAAGATAACTGGCGTTAGCAACAACGGTGGATCGCA 240
|||||| |||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 217 AACTGCATCATCTGACTGCACCATCAAGATAACCGGTGTCAGCAACAACGGTGGATCGCA 276
Query 241 GCCACTAGCTACATTAACTGGGCACCGTGGTCCAGTCTGGGAGGTCGCGTGGGCACACCC 300
|| |||||| |||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 277 GCAACTAGCCACATTAACCGGCCACCGTGGTCCTGTCTGGGAAGTCGCGTGGGCACACCC 336
Query 301 TAAA-TTTGGATCAATGCTAGCTTCATGCTCATATGATGGTCAAGTCATACTCTGGAAAG 359
||| | ||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 337 -AAAGTATGGATCAATCCTTGCTTCATGCTCCTATGATGGTCAAGTCATACTCTGGAAAG 395
Query 360 AAGCCAACCAGAACCAATGGACCCAAGCTCATGTCTTCACAGACCACAAATCTTCAGTCA 419
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 396 AAGGCAACCAGAACCAATGGACCCAAGATCATGTTTTCACAGACCACAAATCTTCAGTCA 455
Query 420 ACTCCATTGCATGGGCTCCTCACGATCTCGGATTATCCTTGGCTTGCGGGTCATCTGATG 479
|||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||
Sbjct 456 ACTCCATTGCATGGGCTCCTCATGATATCGGACTATCCTTGGCCTGCGGGTCATCTGATG 515
Query 480 GCAACATTTCGGTTTTCACAAG-CCGTGCTGATGGTGGCTGGGACACAACAAGGATTGAC 538
||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||
Sbjct 516 GCAACATTTCGGTTTTCAC-AGCCCGTGCTGACGGTGGCTGGGACACATCAAGGATTGAC 574
Query 539 CAAGCGCATCCGGTTGGAGTCACTTCAGTCTCATGGGCCCCGGCCACAGCGCCTGGTGCT 598
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 575 CAAGCACATCCGGTTGGAGTCACTTCAGTCTCATGGGCCCCAGCCACAGCGCCTGGTGCT 634
Query 599 CTTGTGAGCTCTGGTCTGCTCGATCCTGTTTACAAGCTAGCTTCTGGTGGGTGTGATAAC 658
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 635 CTTGTGAGCTCTGGTCTTCTCGATCCGGTTTACAAGCTAGCTTCTGGTGGATGTGATAAT 694
Query 659 ACCGTGAAAGTGTGGAAACTCTCTAACGGGTCATGGAAGATGGATTGCTTTCCAGCTCTT 718
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACCGTGAAAGTGTGGAAGCTCGCTAACGGGTCATGGAAGATGGATTGCTTTCCAGCTCTT 754
Query 719 CAAAAGCACACTGATTGGGTCCGTGATGTGGCTTGGGCACCAAATTTGGGCCTCCCCAAG 778
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 755 CAAAAGCACACTGATTGGGTCCGTGATGTGGCTTGGGCACCAAACTTGGGTCTCCCCAAG 814
Query 779 TCCACCATAGCTAGTGGTTCTCAAGATGGGAAAGTTATCATATGGACAGTGGGAAAAGAA 838
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCCACCATAGCCAGTGGTTCCCAAGATGGGAAAGTTATCATATGGACAGTGGGAAAAGAA 874
Query 839 GGTGAGCAATGGGAAGGTAAGGTTCTCAAGGACTTTATGACTCCCGTGTGGCGGGTCTCA 898
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 875 GGTGAGCAATGGGAAGGTAAGGTTCTCAAGGACTTTATGACTCCTGTGTGGCGGGTCTCG 934
Query 899 TGGTCGTTGACCGGTAACTTGTTGGCCGTGTCCGATGGAAACAACAACGTGACAGTGTGG 958
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 935 TGGTCGTTGACCGGTAACTTATTGGCCGTATCCGATGGGAACAACAACGTGACTGTGTGG 994
Query 959 AAAGAGGCTGTTGATGGAGAGTGGGAACAAGTTACTGCTGTGGAGCCTTAGGTTTTTGAT 1018
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 995 AAAGAGGCTGTTGATGGAGAGTGGGAACAAGTTACTGCTGTTGAGCCTTAGGTTTTTGAT 1054
Query 1019 GCTTTGCTATCTATCTCTCTGCTCTTACCTTTAAGGAACTGAATTAAACACATTTTTCTT 1078
|||||||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1055 GCTTTGCTATCT--CTCT--GCTCTT-CCTTTAAGGAACTGAATCAAACAT-TTTTTCTT 1108
Query 1079 TAATCTTTTCTTAGTCCGGTTTGGTGGGTCTTTTTGAGGGAATGTTGAATTGGTTTTCTT 1138
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1109 TACTCTTTTCTTAGTCCGGTTTGGTGG-TCTTTTTCAGGGAATGTTGAATTGGTTTTCTT 1167
Query 1139 AAAATTCACTTTTGGAttttttttctttttctttttcttttcATAGAGACCACTTTAAAA 1198
||| ||||||||||| ||||| ||| ||| ||||||||||||| |||| |||||||
Sbjct 1168 AAAG---ACTTTTGGATTATTTTT-TTT--CTTATTCTTTTCATAGACACCATTTTAAAA 1221
Query 1199 TTCGAAAAACCGAGATCTTCATGATATATAGTTTGTCTCTTCATTTGATTTTCTTCTTTC 1258
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1222 TTCTAAAAACCAAGATCTTCATGATATATAGTTTGTCTCTTCATTTGATTTTCTTTTTTC 1281
> AT3G01340.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:127355-128994 REVERSE LENGTH=1232
Length=1232
Score = 861 bits (466), Expect = 0.0
Identities = 782/934 (84%), Gaps = 24/934 (3%)
Strand=Plus/Plus
Query 95 GGAAACATGCCAGGC-CAGAAGATTGAAACGGGTCATGAG-GACATTGTCCATGATGTCC 152
||||||||||| | |||||||||||||| |||||| || |||| | | ||||||||
Sbjct 116 GGAAACATGCC-TCCTCAGAAGATTGAAACTGGTCAT-AGCGACACTATTCATGATGTGG 173
Query 153 AAATGGATTACTATGGAAAGCGAATTGCAACTGCCTCATCTGACTGCACCATCAAGATAA 212
||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||
Sbjct 174 TCATGGATTACTATGGAAAGCGAGTAGCAACTGCCTCGTCTGACTGCACGATCAAGATAA 233
Query 213 CTGGCGTTAGCAACAACGGTGGATCGCAGCCA-CTAGCTACATTAACTGGGCACCGTGGT 271
| || || ||||||| ||||||||| ||| || |||||||| ||||| || || || |||
Sbjct 234 CCGGAGTAAGCAACAGCGGTGGATCTCAG-CATCTAGCTACCTTAACCGGTCATCGAGGT 292
Query 272 CCAGTCTGGGAGGTCGCGTGGGCACACCCTAAA-TTTGGATCAATGCTAGCTTCATGCTC 330
|| |||||| | ||||| ||||| ||||| ||| ||||| ||| | || |||||||| ||
Sbjct 293 CCTGTCTGGCAAGTCGCTTGGGCGCACCC-AAAGTTTGGTTCACTTCTCGCTTCATGTTC 351
Query 331 ATATGATGGTCAAGTCATACTCTGGAAAGAAGCCAACCAGAACCAATGGACCCAAGCTCA 390
|||||||| ||| | ||| | |||||||||| ||||| ||||||||||| ||||||||
Sbjct 352 CTATGATGGGCAAATTATATTATGGAAAGAAGGTAACCAAAACCAATGGACACAAGCTCA 411
Query 391 TGTCTTCACAGACCACAAATCT-TCAGTCAACTCCATTGCATGGGCTCCTCACGATCTCG 449
||||||||||||||||||| | || |||||||| || || ||||||||||| || || |
Sbjct 412 TGTCTTCACAGACCACAAA-GTATCTGTCAACTCTATCGCTTGGGCTCCTCATGAACTTG 470
Query 450 GATTATCCTTGGCTTGCGG-GTCATCTGATGGCAACATTTCGGTTTTCACAAGC-CGTGC 507
|| | ||||| |||||||| | |||||||||| ||||| || |||||| | || || ||
Sbjct 471 GACTCTCCTTAGCTTGCGGAG-CATCTGATGGAAACATATCAGTTTTCTC-GGCTCGAGC 528
Query 508 TGATGGTGGCTGGGACACAACAAGGATTGACCAAGCGCATCCGGTTGGAGTCACTTCAGT 567
|||||| || |||||||| |||| ||| |||||||| || || ||||| |||||||||||
Sbjct 529 TGATGGCGGTTGGGACACGACAAAGATAGACCAAGCACACCCTGTTGGTGTCACTTCAGT 588
Query 568 CTCATGGGCCCCGGCCACAGCGCCTGGTGCTCTTGTGAGCTCTGGTCTGCTCGATCCTGT 627
|| ||||| |||||||||| || || || || || ||||||||| || ||||||| ||
Sbjct 589 GTCGTGGGCACCGGCCACAGAACCAGGCGCACTCGTTAGCTCTGGTATGATCGATCCGGT 648
Query 628 TTACAAGCTAGCTTCTGGTGGGTGTGATAACACCGTGAAAGTGTGGAAACTCTCTAACGG 687
||||| ||||| || || |||||||||| ||| |||||||||||||| |||| |||||
Sbjct 649 CTACAAACTAGCATCCGGCGGGTGTGATAGCACGGTGAAAGTGTGGAAGTTCTCGAACGG 708
Query 688 GTCATGGAAGATGGATTGCTTT-CCAGCTCTTCAA-AAGCACACTGATTGGGTCCGTGAT 745
||||||||| |||||||| ||| || |||| |||| |||||||| |||||||||||||||
Sbjct 709 GTCATGGAAAATGGATTG-TTTCCCGGCTC-TCAACAAGCACACGGATTGGGTCCGTGAT 766
Query 746 GTGGCTTGGGCACCAAATTTGGGCCTCCCCAAGTCCACCATAGCTAGTGGTTCTCAAGAT 805
|||||||||||||| || ||||| ||||| ||||| |||||||| |||||||| |||||
Sbjct 767 GTGGCTTGGGCACCGAACTTGGGTCTCCCAAAGTCAACCATAGCCAGTGGTTCAGAAGAT 826
Query 806 GGGAAAGTTATCATATGGAC-AGT-GGGAAAAGAAGGTGAGCAATGGGAAGGTAAGGTTC 863
|||||||| ||||||||||| | | |||||| |||||||||||||||||||||| |||
Sbjct 827 GGGAAAGTGATCATATGGACCA-TAGGGAAA-GAAGGTGAGCAATGGGAAGGTACTGTTT 884
Query 864 TCAAGGACTTT-ATGACTCCCGTGTGGCGGGTCTCATGGTCGTTGACCGGTAACTTGTTG 922
| || || ||| | || || |||||||||||||| ||||||||||||||||| ||||||
Sbjct 885 TGAAAGA-TTTCAAAACACCAGTGTGGCGGGTCTCGTGGTCGTTGACCGGTAATTTGTTG 943
Query 923 GCCGTGTCCGATGGAAACAACAACGTGACAGTGTGGAAAGAGGCTGTTGATGGAGAGTGG 982
|| || |||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 944 GCTGTTTCCGATGGGAACAATAACGTTACAGTGTGGAAAGAGTCTGTTGATGGAGAGTGG 1003
Query 983 GAACAAGTTACTGCTGTGGAGCCTTAGGTTTTTG 1016
|||||||| |||| ||| ||||| ||| || |||
Sbjct 1004 GAACAAGTGACTGTTGTTGAGCCATAGATTGTTG 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5