BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481917
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30070.1 | Symbols: ATKT1, ATKT1P, ATKUP1, KUP1, KT1 | potas... 3609 0.0
> AT2G30070.1 | Symbols: ATKT1, ATKT1P, ATKUP1, KUP1, KT1 | potassium
transporter 1 | chr2:12834993-12838626 FORWARD LENGTH=2403
Length=2403
Score = 3609 bits (1954), Expect = 0.0
Identities = 2215/2339 (95%), Gaps = 26/2339 (1%)
Strand=Plus/Plus
Query 43 AACTAAACTGAAATATTGC--AGTTTTGCTTACACGGCCATGAACCAATCACCATCTCTA 100
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 66 AACTAAACTGAAATATTGCAGAGTTTTGAATACACGGCCATGAACCAATCACCATCTCTT 125
Query 101 ATCGAACAGGGTATTTCTCAACAGCATTTGAAGACTGTGTCTTGTGCCAATGTTCTCACT 160
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 126 ATCGAACAGGGTATTTCTCAACAGCATTTGAAGACTTTGTCTTGTGCCAATGTTCTTACT 185
Query 161 TTGGCTTACCAGAGCCTTGGAGTGATCTATGGTGATCTTAGTACATCGCCTCTATATGTT 220
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 186 TTGGCTTACCAGAGTCTTGGAGTGATCTATGGTGATCTTAGTACATCGCCACTCTATGTT 245
Query 221 TATAAAACCACTTTCTCTGGGAAACTAAGTCTCCATGAAAACGATGAAGAGATCTTTGGA 280
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 246 TATAAGACCACTTTCTCTGGGAAACTAAGTCTTCATGAAGACGATGAAGAGATCTTTGGA 305
Query 281 GTGTTCTCTTTCATCTTCTGGACATTTACACTCATTGCTCTCTTTAAATACGTTTTCGTT 340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 306 GTGTTCTCTTTCATCTTCTGGACATTTACACTCATTGCTCTTTTTAAATACGTTTTCATT 365
Query 341 GTTCTCTCTGCAGATGACAATGGAGAAGGTGGAACATTTGCGTTGTACTCGCTTCTGTGT 400
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 366 GTTCTCTCAGCAGATGACAATGGAGAAGGTGGAACATTTGCGTTGTACTCGCTTCTTTGT 425
Query 401 AGATATGCCAAGCTAAGGATTTTACCAAATCATCAAGAAATGGATGAGAAACTATCAACA 460
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGATATGCCAAGCTAAGCATTTTACCAAATCATCAAGAAATGGATGAGAAACTATCAACA 485
Query 461 TATGCAATGGGAAGCCCGGGAGAGACTCGGCAGAGCGCAGCGGTTAAATCATTCTTTGAG 520
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 TATGCAACGGGAAGCCCAGGAGAGACTCGGCAAAGCGCAGCGGTTAAATCATTCTTTGAG 545
Query 521 AAACACCCGAAATCTCAAAAGTGTTTGTTGCTCTTTGTGCTTTTAGGGACATGTATGGCT 580
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 546 AAGCATCCGAAATCTCAAAAGTGTTTGTTGCTCTTTGTTCTTTTAGGGACATGTATGGCT 605
Query 581 ATTGGTGATAGTGTCCTCACTCCAACAATCTCAGTTCTTTCAGCTGTTTCTGGAGTCAAG 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATTGGTGATAGTGTCCTCACTCCAACAATCTCAGTTCTTTCAGCTGTTTCTGGAGTCAAA 665
Query 641 CTCAAGATTCCCAACCTTCACGAGAATTATGTTGTCATCATCGCCTGTATCATCTTGGTG 700
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 CTCAAGATTCCCAACCTTCACGAGAATTATGTTGTCATCATCGCATGTATCATCTTGGTG 725
Query 701 GCGATATTCTCAGTCCAGCGTTATGGTACGCATAGAGTCGCCTTCATTTTCGCTCCAATC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCGATATTCTCAGTCCAGCGTTATGGTACGCATAGAGTCGCCTTCATTTTCGCTCCAATC 785
Query 761 TCCACCGCTTGGCTTCTCTCCATTAGCAGCATTGGAGTTTACAACACTATTAAATGGAAC 820
||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 786 TCCACTGCTTGGCTTCTCTCCATCAGTAGCATTGGAGTTTACAACACTATAAAATGGAAC 845
Query 821 CCGCGTATAGTCTCTGCGCTTTCGCCTGTTTACATGTATAAGTTCCTCAGAAGCACCGGT 880
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 846 CCGCGTATAGTCTCTGCGCTTTCGCCTGTTTACATGTATAAGTTCCTTAGAAGCACCGGT 905
Query 881 GTAGAAGGGTGGGTTTCACTTGGAGGAGTTGTTCTTTCAATCACTGGTGTTGAGACTATG 940
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 906 GTTGAAGGGTGGGTTTCACTTGGAGGTGTTGTTCTTTCAATCACAGGTGTTGAGACTATG 965
Query 941 TTTGCTGACTTAGGTCACTTCTCATCTCTGTCCATAAAGGTGGCTTTCTCGTTCTTTGTA 1000
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 966 TTTGCTGACTTAGGTCACTTCTCTTCTCTGTCCATAAAGGTGGCTTTCTCGTTCTTTGTA 1025
Query 1001 TACCCATGTTTGATTCTTGCGTATATGGGCGAGGCTGCGTTTCTCTCTAAACATCATGAA 1060
||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1026 TACCCGTGTTTGATACTTGCATACATGGGTGAGGCTGCGTTTCTCTCTAAACACCATGAA 1085
Query 1061 GACATTCAGCAAAGCTTCTACAAGGCGATACCCGAGCCTGTGTTCTGGCCAGTGTTCATT 1120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GATATTCAGCAAAGCTTCTACAAGGCGATACCCGAGCCTGTGTTCTGGCCAGTGTTCATT 1145
Query 1121 GTGGCTACATTTGCAGCTGTGGTGGGAAGCCAAGCTGTCATATCCGCAACATTTTCGATC 1180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1146 GTGGCTACATTTGCAGCTGTGGTGGGAAGCCAAGCTGTCATATCCGCAACGTTTTCGATC 1205
Query 1181 ATAAGTCAATGCTGTGCGCTCGATTGCTTTCCCCGGGTCAAGGTCATTCACACTTCAAGC 1240
||||||||||| ||||| || ||||||||||| ||||||||| |||||||||||||||||
Sbjct 1206 ATAAGTCAATGTTGTGCACTTGATTGCTTTCCTCGGGTCAAGATCATTCACACTTCAAGC 1265
Query 1241 AAAATACATGGACAAATCTATATCCCTGAAGTTAACTGGATGCTGATGTGCCTTTGTTTG 1300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1266 AAAATACATGGACAAATCTATATCCCTGAAGTTAACTGGATGCTGATGTGTCTTTGCCTG 1325
Query 1301 GCGGTCACAATCGGGTTAAGAGACACTAACATGATGGGTCATGCATACGGACTTGCTGTG 1360
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1326 GCGGTCACTATCGGGTTAAGAGACACTAATATGATGGGTCATGCATATGGACTTGCTGTG 1385
Query 1361 ACCTCTGTGATGCTTGTGACTACATGTTTGATGACTTTAGTGATGACAATTGTCTGGAAG 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 ACCTCTGTGATGCTTGTGACTACATGTTTGATGACTTTAGTGATGACAATTGTCTGGAAG 1445
Query 1421 CAAAGAATCATTACAGTTCTCGCATTCGTGGTCTTTTTTGGTTCCATCGAGCTTCTTTAT 1480
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1446 CAAAGAATCATTACAGTTCTCGCATTCGTTGTCTTTTTCGGTTCCATCGAGCTTCTCTAT 1505
Query 1481 TTCTCTTCATGCGTCTACAAAGTACCCGAAGGAGGTTGGATCCCGATTCTCCTCTCCTTA 1540
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1506 TTCTCGTCATGCGTCTACAAAGTACCTGAAGGAGGTTGGATTCCGATTCTCCTCTCTTTG 1565
Query 1541 ACATTCATGGCGGTAATGTACATATGGAACTACGGAACTACAAAGAAACATGAATTCGAC 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 ACATTCATGGCGGTAATGTACATATGGAACTACGGAACTACAAAGAAACATGAATTCGAC 1625
Query 1601 GTTGAGAACAAGGTCTCGATGGACCGGATAGTTTCTCTAGGACCGAGCATAGGAATGGTG 1660
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1626 GTTGAGAACAAGGTCTCGATGGACCGGATAGTTTCTCTAGGACCAAGCATAGGAATGGTT 1685
Query 1661 AGAGTTCCCGGAATAGGACTAGTCTACTCGAATCTTGTGACGGGAGTTCCAGCTGTTTTC 1720
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1686 AGAGTTCCAGGAATAGGACTGGTCTATTCGAATCTTGTGACGGGAGTTCCAGCTGTTTTC 1745
Query 1721 GGACATTTCGTGACGAATTTGCCGGCATTTCACAAGATTCTGGTGTTTGTATGTGTGAAA 1780
|||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 1746 GGACATTTCGTGACGAATCTGCCTGCGTTTCACAAGATTCTAGTGTTTGTATGTGTGAAG 1805
Query 1781 TCGGTTCAGGTTCCCTATGTTGGAGAAGAAGAGAGATTTGTGATAAGCAGAGTAGGGCCA 1840
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1806 TCAGTTCAGGTTCCTTATGTTGGAGAAGAAGAGAGGTTTGTGATAAGCAGAGTAGGGCCA 1865
Query 1841 AAAGAGTATGGAATGTTTAGAAGTGTGGTTAGATATGGATACAGAGATGTTCCAAGAGAA 1900
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1866 AAAGAGTATGGAATGTTTAGAAGTGTGGTTAGGTATGGATACAGAGATGTTCCTAGAGAA 1925
Query 1901 ATGTATGATTTCGAAAGCCGGTTAGTGTCTGCTATAGTCGAGTTCGTTGAAACAGAACCG 1960
|||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 1926 ATGTATGACTTCGAAAGCCGGTTAGTATCTGCAATAGTCGAATTCGTTGAAACCGAACCG 1985
Query 1961 GGACTTGAAGAAGAAGAAATGTCGAATGTTAGGAGAAAGAAGGAGGAATGTATGGAGATA 2020
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1986 GGACTTGAAGAAGAAGAAATGTCGAGTGTTCGGAGAAAGAAAGAGGAATGTATGGAGATA 2045
Query 2021 ATGGAAGCGAAAGAAGCAGGAGTCGCGTATATACTGGGACATTCATACGCAAAGGCGAAG 2080
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2046 ATGGAAGCGAAAGAAGCTGGAGTAGCGTATATACTGGGACATTCATACGCAAAGGCGAAG 2105
Query 2081 CAATCATCGTCGGTGTTGAAGAAGCTAGCGGTGAATGTCGTGTTTGCGTTCATGAGCACA 2140
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 2106 CAATCATCGTCGGTGTTGAAGAAACTAGCAGTGAATGTTGTATTTGCGTTCATGAGCACG 2165
Query 2141 AATTGCAGAGGAACAGATGTTGTGCTTAATGTTCCTCATACTTCTCTGCTTGAAGTTGGA 2200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2166 AATTGCAGAGGAACAGATGTTGTGCTTAATGTTCCTCACACTTCTCTGCTTGAAGTTGGA 2225
Query 2201 ATGGTTTATTACGTCTAAACAGAGATA-TACTAAGCTTTA--A------CA-TA-AGT-- 2247
|||||||||||||||||||||||| || |||| ||||||| | || || |||
Sbjct 2226 ATGGTTTATTACGTCTAAACAGAG-TAATACTTAGCTTTAGCATAAGATCAGTACAGTTT 2284
Query 2248 --AGTAGTAGTACACTATAGA-GAGAGATCTAACTTCATTTTCAGTTGtttttttAGCA- 2303
|||||||||||| |||| | ||||| |||||||||||||||||||||||| ||||
Sbjct 2285 TTAGTAGTAGTACAGTATATAAGAGAGCTCTAACTTCATTTTCAGTTGTTTT---AGCAG 2341
Query 2304 A-AAGTTTTAATGTGTAAATATACTTACGGTTCATGAATGGAAAATCAAGAAATGATAA 2361
| |||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||||
Sbjct 2342 AGAAGTTT-AATGTGTAAATATACTTACAGTTAATGAA-GGAAAATGAAGAAATGATAA 2398
Score = 78.7 bits (42), Expect = 2e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 ACATTATTATATTCTCTCTGTTTCTTCCAATCCAATCCAATC 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACATTATTATATTCTCTCTGTTTCTTCCAATCCAATCCAATC 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117218272575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5