BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481922
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30120.2 | Symbols: | unknown protein; EXPRESSED IN: 22 pla... 852 0.0
> AT2G30120.2 | Symbols: | unknown protein; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G14750.1);
Has 2527 Blast hits to 2101 proteins in 358 species:
Archae - 77; Bacteria - 245; Metazoa - 1087; Fungi - 215;
Plants - 350; Viruses - 4; Other Eukaryotes - 549 (source:
NCBI BLink). | chr2:12860541-12861910 REVERSE LENGTH=981
Length=981
Score = 852 bits (461), Expect = 0.0
Identities = 534/570 (94%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 1 TACTTTCGCAAACCGGAGAATACAATCGGAGATCGGAAACTATGGCCGGACGAGACCGTT 60
||||||| |||||||||||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 8 TACTTTCACAAACCGGAGAAGATTATCGGAGATCGCAAACTATGGCCGGACGAGATCGTT 67
Query 61 ATCTTCCATCGTCGGCAGTTTCAACTTCATCATCTTCAAGATTAGTAGAATCTCAATTAA 120
|| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 68 ATATTCCATCATCAGCAGTTTCAACTTCATCATCTTCAAGATTATTAGAATCTCAATTAA 127
Query 121 TCGAATCCGATCGAAATCGAGCTCGATCTGTAATCCTCGAGGATCGAATCGCAATTCAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 128 TCGAATCCGATCGAAATCGAGCTCGATCTGTAATCCTCGAGGATCGAATCGCAATCCAAC 187
Query 181 ACCGTGAAATCCAATCTCTTCTCAACGATAACCAACGATTAGCTGTGGCACACATTGGAC 240
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 188 ACCGTGAAATCCAATCTCTTCTCAACGACAATCAACGATTAGCTGTAGCACACATCGGAC 247
Query 241 TCAAAGACCAGCTCAATTTAGCCAAGCGTGAGCTCGAACGGTTACTTGAAACCGCTGCTA 300
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 248 TCAAAGACCAGCTCAATGTAGCTAAGCGTGAGCTCGAACGGTTACTTGAAACCGCTGTTA 307
Query 301 AAGTTAAAGCGGAAGGAGAAGCTAAGGTGCGAGAGGTTTATCAGAATGCGTTGAGGATGG 360
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 308 AAGTTAAAGCGGAAGGAGAAGCTAAAGTGCGTGAGGTTTATCAGAATGCGTTGAGAATGG 367
Query 361 AGGCGGAGGCTCGTGTGATTGATGGACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGGCGGAGGCTCGTGTGATTGATGGACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATG 427
Query 421 TACAGAGGTTAGCTAATGATAGACAGGAGTTAGCTACGGAGTTGGCTATGCTTGATGGTG 480
|||||||||||| || |||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 428 TACAGAGGTTAGGTAGTGATAGACAGGAGTTAGCTACGGAATTGGCTATGTTTGATGATG 487
Query 481 AGATGGTTAAAGCGAAACCGAATTCGGATCGAGCCATTGAGGTTAAGGCGGAGATTGAGA 540
|||||| ||| || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 488 AGATGGCTAAGGCTAAACCGAATTCGGATCGAGCTATTGAGGTTAAATTGGAGATTGAGA 547
Query 541 TTCTTAGAGGAGA-AGTTCGTAAAGGAAGG 569
||||| ||||||| | ||||||||||||||
Sbjct 548 TTCTTCGAGGAGAGA-TTCGTAAAGGAAGG 576
Score = 363 bits (196), Expect = 3e-99
Identities = 246/270 (91%), Gaps = 3/270 (1%)
Strand=Plus/Plus
Query 709 AGGGCTGCTCTTGAGCTTGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAACGCGGT 768
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 574 AGGGCTGCTCTTGAGCTGGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAGCGCGGT 633
Query 769 ATGGAGAAGACTATCGATCACTTGAATCGTGAGATTGTGAAACTTCAGGCAGAATTGGTT 828
|||||||||||||||||||| |||||||| |||||||| |||||| ||| ||||||||||
Sbjct 634 ATGGAGAAGACTATCGATCATTTGAATCGAGAGATTGTAAAACTTGAGGAAGAATTGGTT 693
Query 829 AATTTGGAGACGAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGTAGCTCCAAACCCAAGC 888
|| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 694 GATCTGGAGACTAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGCAGCTCCAACCCCAAGT 753
Query 889 CCTGGATTGGCTGCAAGTTATGGAAACA-CG--GAAAATATTTATGGAGGTCAAGCCCGG 945
|||||||||||||||||||||||||||| | || |||| ||||||||||||| ||||
Sbjct 754 CCTGGATTGGCTGCAAGTTATGGAAACAACACCGATGATATATATGGAGGTCAAGGCCGG 813
Query 946 CAATACCCGGAGGCTAACGGTTCTCACGAG 975
||||||||||||||||| ||| |||| |||
Sbjct 814 CAATACCCGGAGGCTAATGGTACTCATGAG 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5