BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481923
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30130.1 | Symbols: ASL5, LBD12, PCK1 | Lateral organ bounda... 1079 0.0
> AT2G30130.1 | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries
(LOB) domain family protein | chr2:12868630-12869724
FORWARD LENGTH=732
Length=732
Score = 1079 bits (584), Expect = 0.0
Identities = 689/736 (94%), Gaps = 21/736 (3%)
Strand=Plus/Plus
Query 1 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGTTCAAGAGAACTCTATCCTTATTAAC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 6 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGCTCAAGAGAACTCTATCCTTATTAAC 65
Query 61 TTGCAACGATAACTAAAACCGGTG---T-A--ATC------GAAGATGGGCGGTCCGGGA 108
|| ||| ||||||||||||||||| | | ||| ||||||||||||||| |||
Sbjct 66 TTACAAGGATAACTAAAACCGGTGTAATCACGATCATAGTAGAAGATGGGCGGTCCCGGA 125
Query 109 TCATCGCCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 168
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCATCACCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 185
Query 169 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTCGGC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 186 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGT 245
Query 229 GCCAGCAACGTTAGCAAAATGTTACAGGAGCTACCGGTTCATCAAAGAGCTGACGCGGTG 288
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 246 GCCAGCAACGTCAGCAAAATGTTGCAGGAGCTACCAGTTCATCAAAGAGCTGACGCGGTG 305
Query 289 AATAGTCTGGTTTTCGAAGCAAACGCACGAGTTAGAGATCCGGTATACGGATGCGTAGGA 348
|||||||||||||| |||||||||||| |||| ||||||||||| ||||| |||||||||
Sbjct 306 AATAGTCTGGTTTTTGAAGCAAACGCAAGAGTAAGAGATCCGGTCTACGGCTGCGTAGGA 365
Query 349 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 425
Query 409 GCCGAGATTCTCTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTT 468
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GCCGAGATTCTTTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTA 485
Query 469 CTTGAACTAGACCAAGACCACAAGGCTCTCTTGCTAaacaacaacaacatcaataactgc 528
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 486 CTTGAACTAGACCAAGACCACAAAGCTCTCTTACTAAACAACAACAACATCAATAACTGC 545
Query 529 aacaccaacaacaacaacaacaacaataacaacTTGGGTTATGCCATGTCTTCTGGCCAG 588
||||||||||||||||| |||||| | |||| |||||||||||||||||| |||
Sbjct 546 AACACCAACAACAACAATAACAAC--T------TTGG-TTATGCCATGTCTTCTGGACAG 596
Query 589 TTCAACTCTAACTTTGCATCTCCAAGTAGCATAATGCAAATGCAGATGCAAATGCAAATG 648
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 597 TTCAACTCTAACTTTGCCTCACCAAGCAGCATAATGCAAATGCAGATGCAAATGCAAATG 656
Query 649 CAAGACCCTCTTAAGCAAGAGTCTCTTTGGACTtaatgtaataataataataataattaa 708
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAAGACCCTCTTAAGCAAGAATCTCTTTGGACTTAATGTAATAATAATAATAATAATTAA 716
Query 709 tTTTCGACAAGTTTGC 724
| ||||||||||||||
Sbjct 717 TGTTCGACAAGTTTGC 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5