BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481927
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30160.1 | Symbols: | Mitochondrial substrate carrier famil... 2056 0.0
> AT2G30160.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:12877838-12879649 FORWARD LENGTH=1446
Length=1446
Score = 2056 bits (1113), Expect = 0.0
Identities = 1348/1454 (93%), Gaps = 45/1454 (3%)
Strand=Plus/Plus
Query 1 ATGCTCTGTCTTTAGTTTAACCGCCGCCT-C-CTCTCTCTGGTCGGAGAAATTTCCAGAT 58
||||| ||||||||||||||||||||| | | |||||||||||||||||||| |||||||
Sbjct 1 ATGCTTTGTCTTTAGTTTAACCGCCGCATCCTCTCTCTCTGGTCGGAGAAATCTCCAGAT 60
Query 59 TTGGT-ATTTCTCCAATCTTCTCGGAACCCTAATTCAA-CAAA-C-CT-CTCCTTCAGAT 113
||||| ||||||||||||||||||||||||||||| || |||| | || |||||||||||
Sbjct 61 TTGGTCATTTCTCCAATCTTCTCGGAACCCTAATTTAACCAAACCTCTCCTCCTTCAGAT 120
Query 114 TCCTCTT-CTCCTAAATCTCCCT-AAAGCTCAAACCTTT-TCTC--TCAATCCTAAACAA 168
|| |||| ||||| ||||||||| ||||||||||||||| |||| ||||| ||||||||
Sbjct 121 TCATCTTCCTCCT-AATCTCCCTAAAAGCTCAAACCTTTCTCTCAATCAATTCTAAACAA 179
Query 169 TGGCAACAGAAGCAACAACAACAACCAAATTCCCAGAAGCCGATCTCCGTCCAATCCCAC 228
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 TGGCAACAGAAG------CAACAACCAAATTCCCAGAATCCGATCTCCGTCCAATCCCAC 233
Query 229 AACCACCGGATTTTCATCCCGCAATCATCGTTCCAGCTCAAAACACCACTCTTAAATTCT 288
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 234 AACCACCGGATTTTCATCCAGCAATCATCGTTCCAGCTCAAAACACAACTCTTAAATTCT 293
Query 289 GGCAGCTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGCTATGTTTCCAG 348
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGCAACTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGCTATGTTTCCAG 353
Query 349 TAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATTAAACCAATCGGAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATTAAACCAATCGGAA 413
Query 409 TCCGTCAAGCTTTCCGTTCAATTATCAAAACTGATGGACCATCAGCTTTGTATAGAGGTA 468
||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||
Sbjct 414 TCCGTCAAGCTTTCCGTTCAATTATCAAAACCGATGGACCTTCTGCTTTATATAGAGGTA 473
Query 469 TTTGGGCTATGGGACTTGGTGCTGGACCAGCTCATGCTGTTTATTTCTCGTTTTATGAAG 528
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 474 TTTGGGCTATGGGACTTGGTGCTGGACCAGCTCACGCTGTTTATTTCTCATTCTATGAAG 533
Query 529 TTTCTAAGAAGTTTTTATCCGGTGGAAACCCGAATAACTCAGCCGCACACGCGATTTCGG 588
| ||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| |
Sbjct 534 TCTCTAAGAAGTTTTTATCCGGTGGAAACCCTAATAACTCTGCTGCACACGCTATTTCCG 593
Query 589 GTGTTTTCGCTACGATATCGAGTGATGCTGTTTTTACTCCAATGGATATGGTTAAGCAGA 648
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 594 GTGTTTTCGCTACTATATCTAGTGATGCTGTGTTTACTCCAATGGATATGGTTAAGCAAA 653
Query 649 GGTTGCAAATTGGGAATGGGACTTATAAAGGAGTTTGGGATTGTATTAAGAGGGTAATGC 708
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||
Sbjct 654 GGTTGCAAATTGGGAATGGAACTTATAAAGGAGTTTGGGATTGTATCAAGAGAGTAACGC 713
Query 709 GTGAGGAAGGGTTCGGTGCTTTTTACGCTTCGTATAGAACTACCGTGTTGATGAATGCTC 768
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 GTGAGGAAGGGTTTGGTGCTTTTTACGCTTCGTATAGAACTACTGTGTTGATGAATGCTC 773
Query 769 CGTTTACCGCTGTTCATTTCACTACTTATGAGGCGGTTAAGAGAGGATTGAGGGAGATGT 828
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 774 CGTTTACCGCTGTGCATTTCACTACTTATGAGGCGGTTAAGAGAGGTTTGAGGGAGATGT 833
Query 829 TGCCTGAGCATGCTGGTGGAG-ATGAGGATGAGGAAGGTTGGTTGATTTATGCTACTGCT 887
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 834 TGCCTGAGCATGCTGTTGGAGCA-GAGGATGAGGAAGGTTGGTTGATTTATGCTACTGCT 892
Query 888 GGAGCTGCGGCGGGTGGGTTAGCGGCCGCTGTTACTACTCCGCTTGATGTTGTCAAGACG 947
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 893 GGAGCTGCGGCTGGTGGGTTAGCGGCTGCTGTAACTACTCCGCTTGATGTTGTTAAGACG 952
Query 948 CAATTGCAGTGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGAGCGGTTCAATAAGCGAT 1007
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 953 CAGTTGCAATGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGAGCAGTTCAATAAGCGAT 1012
Query 1008 GTGTTCCGTACAATAGTGAAGAAAGATGGTTATAGAGGACTTGCCAGAGGATGGCTACCA 1067
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1013 GTGTTCCGTACAATAGTGAAGAAAGACGGTTATAGAGGACTTGCTAGAGGATGGCTACCA 1072
Query 1068 AGAATGCTCTTCCATGCTCCAGCAGCTGCGATCTGCTGGTCAACTTATGAAACAGTCAAA 1127
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1073 AGAATGCTCTTCCATGCTCCAGCAGCTGCGATTTGCTGGTCCACTTATGAAACAGTCAAA 1132
Query 1128 TCCTTCTTTCAAGATCTCAACGG-----C----GCAGCTTGAAAAGACACAAACAAACAT 1178
|| ||||||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 1133 TCTTTCTTTCAAGATCTCAATGGTGAAGCAAACGCAGCTTGAAAAGACACAAACATACAT 1192
Query 1179 GCGTTTGGCTTAATTCGCTTGCCTGATTCAGGTGATTGATTCTTCATAGAGCTAGCTACT 1238
||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1193 GCGTTTGGCATAATTTACTTGCCTGATTCAGGTCATTGATTCTTCATAGAGCTAGCTACT 1252
Query 1239 GGTTGGTTAGTGTTAACACTAGCTCTTAGAGA-GATCTCTGTTTGTATAATT-ATTTGTT 1296
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1253 GGTTGGTTAGTATTAACACTAGCTCTTAGAGAAGATCTCTGTTTGTATAATTTATTTGTT 1312
Query 1297 TTC---ACGTAATAATGTTTTCAGATTAGAGTTACAACAACCCCAAGGCCTTTTTTCT-- 1351
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TTCTTCACGCAATAATGTTATCAGATTAGAGTTACAACAACCCCAAGGCCTTTTTTCTGG 1372
Query 1352 T----A---ACAGAGAAATTTTGTATTTTTATTTGCTTTCATGAGAAA-ATACTATAAAG 1403
| | | |||||||||||||| ||||||||| ||| |||||||| |||||||||||
Sbjct 1373 TTTGCATTGATAGAGAAATTTTGTACTTTTATTTGTTTTAATGAGAAAGATACTATAAAG 1432
Query 1404 AGATAGATGAGCTT 1417
||||||||||||||
Sbjct 1433 AGATAGATGAGCTT 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5