BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481929
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30170.1 | Symbols: | Protein phosphatase 2C family protein... 1639 0.0
> AT2G30170.1 | Symbols: | Protein phosphatase 2C family protein
| chr2:12879675-12881498 REVERSE LENGTH=1048
Length=1048
Score = 1639 bits (887), Expect = 0.0
Identities = 1002/1055 (95%), Gaps = 18/1055 (2%)
Strand=Plus/Plus
Query 1 AGAGAGCAAACCATTGCAGGAAATGGCGATTCCAGTGACGAGAATGATGGTTCCTCACGC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AGAGAGCAAGCCATTGCAGGAAATGGCGATTCCAGTGACGAGAATGATGGTTCCTCACGC 62
Query 61 AAAACCATCGCTTCGTCTCTCACATCCGAATCTTCCAAATCCTAGTCGCGTTGACTTCCT 120
|| ||||||||||||||||| || | | |||||| ||||||||||||||||||||
Sbjct 63 AATACCATCGCTTCGTCTCT--CA--C--A---TCCAAACCCTAGTCGCGTTGACTTCCT 113
Query 121 CTGTCGCTGTGCTCCATCAGAACTCCAACCACTTCGGCCTGAACTCTCTTTATCTGTCGG 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 114 CTGTCGCTGTGCTCCATCAGAAATCCAACCACTTCGGCCTGAACTCTCTTTATCTGTCGG 173
Query 181 AATTCACGCAATCCCTCATCCAGATAAGGTAGAGAAAGGTGGAGAAGATGCTTTCTTTGT 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 174 AATTCACGCAATCCCTCATCCAGATAAGGTAGAGAAAGGTGGTGAAGATGCTTTCTTTGT 233
Query 241 GAGTAGTTATAGAGGTGGAGTCATGGCTGTTGCAGATGGTGTCTCCGGTTGGGCTGAACA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAGTAGTTATAGAGGTGGAGTCATGGCTGTTGCAGATGGTGTCTCCGGTTGGGCTGAACA 293
Query 301 AGATGTTGATCCTTCCTTGTTCTCTAAAGAACTCATGGCTAATGCTTCTCGTTTAGTTGA 360
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 294 AGATGTTGATCCTTCCTTGTTCTCTAAAGAACTTATGGCTAACGCTTCTCGTTTAGTTGA 353
Query 361 TGATGAAGAGGTCAGATATGATCCTGGTTTCCTTATTGACAAAGCTCATACCGCAACTAC 420
||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 354 TGACCAAGAGGTCAGATATGATCCTGGTTTTCTCATTGACAAAGCTCATACCGCAACTAC 413
Query 421 TTCCAGAGGTTCTGCTACAATTATTCTAGCTATGCTTGAGGAAGTGGGTATTCTCAAAAT 480
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCTAGAGGTTCTGCCACAATTATTCTAGCTATGCTTGAGGAAGTGGGTATTCTCAAAAT 473
Query 481 AGGCAATGTTGGTGACTGTGGACTTAAGCTTCTTCGTCAAGGTCAGATCATTTTTGCCAC 540
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 474 AGGCAATGTTGGTGACTGTGGACTTAAGCTTCTTCGGGAAGGTCAGATTATTTTTGCCAC 533
Query 541 TACTCCACAAGAGCACTATTTTGACTGTCCCTACCAATTAAGCTCTGAGGGCTCTGCTCA 600
| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 534 TGCTCCACAAGAGCACTATTTTGACTGTCCTTACCAACTAAGCTCTGAGGGGTCTGCTCA 593
Query 601 AACTTTTCTAGATGCATCGTTTAGCATAGTGGAAGTACAGAAGGGAGACGTGATCGTGAT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AACTTATCTAGATGCATCGTTTAGCATAGTGGAAGTACAGAAGGGAGACGTGATCGTGAT 653
Query 661 GGGTTCAGATGGGCTTTTCGATAATGTGTTTGATCATGAGATCGTTTCGATAGTAACCAA 720
||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 654 GGGTTCAGACGGACTTTTCGATAATGTGTTTGATCATGAGATCGTTTCTATAGTGACCAA 713
Query 721 GCATACAGATGTTGCA-ATTTCATCGAGGTTATTAGCTGAAGTGGCGAGTAGCCATTCAA 779
|||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||
Sbjct 714 GCATACAGATGTTGCAGAGT-CATCAAGGTTATTAGCTGAAGTGGCGAGTAGCCATTCAA 772
Query 780 GAGATACAGATTTTGAGTCTCCATATGCATTAGAAGCAAGAGCCAAGGGGTTTGATGTTC 839
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GAGATACAGAGTTTGAGTCTCCATATGCATTAGAAGCAAGAGCCAAGGGGTTTGATGTTC 832
Query 840 CTCTCTGGAAGAAGGTACTAGGAAAGAAGCTAACAGGAGGGAAGCTTGATGATGTCACTG 899
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 833 CTCTCTGGAAGAAGGTACTAGGAAAGAAGCTTACAGGAGGGAAGCTTGATGATGTCACTG 892
Query 900 TGATCGTTGCCAAAGTTGTTAGCTCATGACTCACTTTGTTCTTGATATGATCTTCTCTTT 959
||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 893 TGATCGTTGCCAAAGTTGTTAGCTCATGAATCACTCTGTTCATGATAAGATCTTCTCTTT 952
Query 960 ATTCTTTTTGTACAAGTCCTTGTAAGAAACTTGTTCTTCAAAGAAATTGATAAATGGTA- 1018
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 ATTCTTTTTGTACAAGTCCTTGTAAGAAACTTGTTCTTCACAGAAATTGATAAATGGTAT 1012
Query 1019 ---A---TTCAAACAATAAGAATCGAATCTTTATC 1047
| ||||||||||||||||||||||||||||
Sbjct 1013 TTCAAAGTTCAAACAATAAGAATCGAATCTTTATC 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5