BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481930
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30200.1 | Symbols: | catalytics;transferases;[acyl-carrier... 2279 0.0
> AT2G30200.1 | Symbols: | catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding | chr2:12882955-12885534
REVERSE LENGTH=1441
Length=1441
Score = 2279 bits (1234), Expect = 0.0
Identities = 1357/1418 (96%), Gaps = 2/1418 (0%)
Strand=Plus/Plus
Query 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGGTTACTTCTG-TTACTTCTCTGAATGCGTTC 59
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGATTACTACTGTTTACTTCTCTGAATGCGTTC 60
Query 60 ACTGCTTCACCATACTATCCTACGCACTTCTCGGTCTCATTTTCTTATCCTGCGCCCTCC 119
||||||||||| ||||||| ||| ||| |||| |||||||| |||||||| |||| || |
Sbjct 61 ACTGCTTCACCGTACTATCTTACTCACATCTCCGTCTCATTCTCTTATCCGGCGCACTTC 120
Query 120 TCTCTCCGCCATGGCCACCGCCGCCTCCTCTTCCTTGCTCCTCCCTTCCGTATCTCTCAA 179
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TCTCTCCGCCATGGCCACCACCGCCTCCTCTTCCTTGCTCCTCCCTTCCATATCTCTCAA 180
Query 180 CAATCTCTCCAGCTCTAAAAATGCCTCCTTTTGCTTCGCCGCCAAGAATCTCAACCGATC 239
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 181 CAATCTCTCCTCCTCTAAAAATGCCTCCTTTGGCTTCGCCGCCAAGAATCTCAGCCGATC 240
Query 240 TAGGGTTTCAATGAGTGTCTCCGCTGGATCTCAGTCTACTACTGTTCATGATTCTTTGTT 299
|||| |||| ||||| ||||| |||||||||||| |||||||||||| |||||| ||||
Sbjct 241 TAGGATTTCTATGAGCGTCTCTGCTGGATCTCAGAGTACTACTGTTCACGATTCTCTGTT 300
Query 300 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 360
Query 360 AATGGGTAAAGAGGCTCAGAGTGTTGCAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 419
|||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AATGGGAAAAGAGTCTCAGAGTGTTGGAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 420
Query 420 TATCTTAGGGTATGATCTTTTGGAAATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TATCTTAGGGTATGATCTTTTGGATATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 480
Query 480 TACGGTTATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACGGTCATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 540
Query 540 TGTTCGTGAAGGCGGAGAACAGATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTCGTGAAGGCGGAGAACAAATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 600
Query 600 GGGAGAGTACACTGCTCTGGCATTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGAGAGTATACTGCTCTGGCTTTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 660
Query 660 TGTAAAACTTAGAGGAGAAGCCATGCAGGCTGCGGCAGATGCTGCTAAGAGTGCCATGGT 719
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 661 TGTAAAACTTAGAGGAGAAGCTATGCAGGCTGCTGCAGATGCTGCTAAGAGTGCCATGGT 720
Query 720 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAAGA 780
Query 780 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTATTTATGTCCGGGTAATTACGCAGT 839
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGGGTAATTACGCAGT 840
Query 840 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCCAAGTCATTCAAAGCCCG 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 841 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCTAAGTCATTCAAAGCACG 900
Query 900 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 960
Query 960 CACGAGATTAGAAGCTGCATTGGCTGCAACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1019
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 961 CTCGAGATTAGAAGCTGCATTGGCAGCCACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1020
Query 1020 ATCCAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1079
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTCGAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1080
Query 1080 CCAGGTCACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTAGCCAAAGGACT 1139
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1081 CCAGGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACT 1140
Query 1140 AAAAAGCAGCTATGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1199
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TAAAAGCAGCTACGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1200
Query 1200 TAAAAGCGCCAGTGTCGAAAACATCAGTGCTTGAGAGTCTTGCTAGTTTTTTGTTCACAT 1259
||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1201 TAAAAGCGCAAGTTTCGAAAACATCAGTGCTTGAGAGTATTGCTAGCTTTTTGTTCACAT 1260
Query 1260 GTATTTGAGTTGATAATCACTAATAATAAGTAAATTTAAAACGTATGTCTGTGGAATCTC 1319
||||||||||||| ||||| | |||||||||||||||| |||||||||||||||| ||||
Sbjct 1261 GTATTTGAGTTGAGAATCATTGATAATAAGTAAATTTACAACGTATGTCTGTGGA-TCTC 1319
Query 1320 TCTAGTGCTTCAGCAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTAGTGCTTCAATAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379
Query 1380 CATGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417
|| |||||||||||||||||||||||||||||||||||
Sbjct 1380 CAGGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5