BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481932
Length=2027
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30210.1 | Symbols: LAC3 | laccase 3 | chr2:12887446-1288987... 3103 0.0
> AT2G30210.1 | Symbols: LAC3 | laccase 3 | chr2:12887446-12889874
REVERSE LENGTH=2049
Length=2049
Score = 3103 bits (1680), Expect = 0.0
Identities = 1918/2034 (94%), Gaps = 12/2034 (1%)
Strand=Plus/Plus
Query 1 ACATAGAGCTTCTCACAGTGAAGCAAAAAATGGAGTCTCTTCGGCGATTCTCCTTCG-TA 59
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||
Sbjct 19 ACAGAGAGCTTCTCACAGTGAAGCAAACAATGGAGTCTTTTCGGCGATTCTCCTT-GCTA 77
Query 60 TCCTTCATTGCTCTTCTTGCCTACTTCGCTTTCCTCGCTTCCGCTGAACATCATGTCCAA 119
||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 78 TCCTTCATTGCCCTACTTGCCTACTTCGCTTTCCTCGCTTCTGCTGAACATCACGTCCAT 137
Query 120 CAATTCGTGATCATACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CAATTCGTGATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT 197
Query 180 GTGAACGGTCAATTCCCTGGTCCAACACTTATAGTCAGGAACGGTGACTCTCTCGCAATC 239
||||| ||||| | |||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 198 GTGAATGGTCAGTACCCTGGTCCAACGCTTGTGGTCAGGAACGGTGACTCTCTCGCAATC 257
Query 240 ACTGTCATCAACAGAGCCCGTTACAACATTAGTATTCATTGGCATGGAATAAGACAGCTG 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 258 ACTGTCATCAACAGAGCCCGTTACAACATTAGTATTCATTGGCATGGAATCAGACAGCTG 317
Query 300 AGGAATCCGTGGGCTGATGGTCCAGAGTACATAACACAATGTCCAATCCGTCCAGGGCAA 359
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 318 CGGAATCCGTGGGCCGATGGTCCAGAGTATATAACACAATGTCCGATCCGTCCAGGACAA 377
Query 360 AGCTACACTTACAGATTCAAAATCGAGGACCAAGAGGGTACGCTTTGGTGGCACGCTCAT 419
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 ACCTACACTTACAGATTCAAAATCGAGGATCAAGAGGGTACGCTTTGGTGGCACGCTCAT 437
Query 420 AGCCGTTGGCTCAGAGCCACCGTCTATGGTGCTCTAATCATTTACCCTCGTCTTGGTTCT 479
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 438 AGCCGCTGGCTCAGAGCCACGGTCTATGGTGCTCTCATCATTTACCCTCGTCTTGGTTCT 497
Query 480 CCTTATCCCTTCTCTATGCCCAAACGTGACATTCCTATTCTTCTTGGGGAATGGTGGGAT 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 498 CCTTATCCCTTCTCTATGCCCAAACGTGACATTCCAATTCTTCTTGGGGAATGGTGGGAT 557
Query 540 AGAAACCCAATGGACGTTTTGAGGCAAGCACAATTCACGGGTGCAGCACCTAATGTATCT 599
|||||||||||||| ||||||| |||||||||||| ||||| |||||| ||||||| |||
Sbjct 558 AGAAACCCAATGGATGTTTTGAAGCAAGCACAATTTACGGGAGCAGCAGCTAATGTCTCT 617
Query 600 GACGCTTACACAATCAACGGTCAACCAGGGGATCTTTACCGCTGTTCGCGGGCCGGGACA 659
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 618 GACGCTTACACAATCAACGGTCAACCAGGCGATCTTTACCGCTGCTCGCGGGCTGGGACA 677
Query 660 ATCCGTTTTCCAATTTTTCCCGGGGAGACGGTGCAACTCCGTGTCATTAACGCTGCTATG 719
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 678 ATCCGTTTTCCAATTTTCCCCGGGGAGACGGTGCAACTCCGTGTCATCAACGCTGGTATG 737
Query 720 AACCAAGAGCTTTTCTTCTCAGTCGCCAACCACCAGTTCACAGTCGTTGAAACTGATTCC 779
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 738 AACCAAGAGCTCTTCTTCTCAGTCGCCAACCACCAGTTCACAGTTGTAGAAACTGATTCC 797
Query 780 GCCTACACGAAACCATTCACCACAAGTGTCATCATGATCGGTCCCGGTCAAACCACTAAC 839
||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 798 GCCTACACGAAACCATTCACCACAAATGTCATCATGATCGGTCCTGGCCAAACCACTAAC 857
Query 840 CTCCTCCTCACGGCAAACCAGCGACCAGGTCGTTATTACATGGCAGCTCGAGCCTACAAC 899
|||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 858 GTCCTCCTCACGGCAAACCAGAGACCAGGCCGCTACTACATGGCAGCTCGAGCCTACAAC 917
Query 900 AGCGCAAACGCTCCTTTCGACAACACAACCACAACCGCTATCTTACAATACGTCAACGCT 959
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 918 AGCGCAAACGCCCCGTTCGACAACACAACCACTACTGCTATCTTACAATACGTCAACGCT 977
Query 960 CCAACTCGACGCGGCCGTGGTCGTGGTCAGATCGCTCCAGTTTTCCCGGTCCTTCCCGGT 1019
||||| |||| ||||||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct 978 CCAACAAGACGTGGCCGTGGTCGTGGTCAAATCGCTCCTGTTTTCCCAGTCCTCCCCGGG 1037
Query 1020 TTCAATGACACCGCAACAGCAACCGCTTTCACCAACCGTCTGCGATACTGGAAACGAGCT 1079
||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1038 TTCAACGACACCGCAACCGCAACTGCTTTCACCAACCGTCTCCGATACTGGAAACGAGCT 1097
Query 1080 CCAGTACCACAACAAGTCGACGAGAACCTCTTTTTCACCGTCGGGTTGGGGCTAATCAAC 1139
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1098 CCAGTACCACAACAAGTCGACGAGAACCTCTTTTTCACCGTCGGATTAGGGCTAATCAAC 1157
Query 1140 TGCT-CCAACCCAAACAG-CCCGCGTTGCCAAGGTCCTAACGGAACCCGATTCGCGGCCA 1197
|| | ||||||||||||| ||| |||||||||||||||||||| ||||||||||| || |
Sbjct 1158 TG-TGCCAACCCAAACAGTCCC-CGTTGCCAAGGTCCTAACGGGACCCGATTCGCAGCAA 1215
Query 1198 GCATGAACAACATGTCCTTCGTGCTACCACGAAGGAACTCCGTCATGCAAGCTTACTACC 1257
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1216 GCATGAACAACATGTCCTTCGTGCTACCACGAAGTAACTCCGTCATGCAAGCATATTACC 1275
Query 1258 AAGGTATGCCC-GGAATCTTCACGACAGATTTTCCACCCGTTCCACCAGTGCAATTCGAT 1316
|||| | ||| ||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 1276 AAGGCA-CCCCAGGAATCTTCACAACGGATTTTCCGCCCGTTCCACCGGTGCAATTCGAT 1334
Query 1317 TACACCGGTAACGTTAGCCGCGGGTTATGGCAGCCCATAAAAGGAACCAAAGCTTACAAG 1376
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TACACAGGTAACGTTAGCCGCGGGTTATGGCAGCCCATAAAAGGAACCAAAGCTTACAAG 1394
Query 1377 CTTAAGTACAAAGCTAATGTTCAGATTGTGTTACAAGACACAAGCATTGTCACGCCTGAG 1436
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1395 CTTAAGTACAAATCTAATGTTCAGATTGTGTTACAAGACACTAGCATTGTCACGCCAGAG 1454
Query 1437 AATCATCCCATGCATTTACACGGGTACCAATTCTACGTGGTCGGGTCAGGTTTTGGCAAT 1496
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1455 AATCATCCCATGCATCTACACGGGTACCAATTCTACGTGGTCGGGTCAGGTTTCGGTAAT 1514
Query 1497 TTCAACCCGAGAACAGACCCGGCTAGGTTTAACTTATTTGACCCACCAGAGAGGAACACC 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TTCAACCCGAGAACAGACCCGGCTAGGTTTAACTTATTTGACCCACCAGAGAGGAACACC 1574
Query 1557 ATTGGAACACCTCCAGGTGGTTGGGTGGCAATCCGGTTCGTCGCTGATAATCCAGGAGCA 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1575 ATTGGAACACCTCCAGGTGGTTGGGTGGCAATTCGGTTCGTCGCTGATAATCCAGGAGCA 1634
Query 1617 TGGTTTATGCATTGTCACATTGATTCACATTTGGGATGGGGTTTGGCTATGGTTTTCCTA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1635 TGGTTTATGCATTGTCACATTGATTCACATTTGGGATGGGGTTTGGCTATGGTTTTCTTG 1694
Query 1677 GTCGAGAACGGTCGTGGACAGTTGCAATCGGTGCAGGCTCCACCGTTGGATCTTCCAAGA 1736
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1695 GTAGAGAACGGTCGTGGACAGTTGCAATCGGTGCAGGCTCCACCATTGGATCTTCCAAGA 1754
Query 1737 TGCTAATAAAAATCTTCTACCGTTGGATCTAAACG-ATCTATGGGgtttcgttttttgtt 1795
|||||||||||| |||||||||||||||||||| | || |||||||||| ||||||||||
Sbjct 1755 TGCTAATAAAAAACTTCTACCGTTGGATCTAAA-GAATTTATGGGGTTTGGTTTTTTGTT 1813
Query 1796 cttgttttttAATC-AAAAAAGACTTTGTGAGTCTTGATATGTTAAAGATGGACAACTGC 1854
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1814 CTTGTTTTTTAATCAAAAAAAGACTTCGTGAGTCTTGATATGTTAAAGATGGACAACTGC 1873
Query 1855 TCTATTGAAAGTGGTTCAACCTTTGTTTTCGATGTACTTTTGTTATTTTCCTCGTAATAG 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 TCTATTGAAAGTGGTTCAACCTTTGTTTTCGATGTACTTTTGTTATTTTCCTCGTAATAG 1933
Query 1915 AGTGAGTGTTGTGATTTTTCCGATTAAAAATT-ACCAAATAAAAGCTGTGTTAGTCAATC 1973
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1934 AGTGAGTGTTTTCATTTTTCCGATTAAAAATTTACCAAATAAAAGCTGTGTTAGTTAATC 1993
Query 1974 ATCTTCTTCTAGCTGACTTTCCTAAACAATTTTATTAGTTATTAACTTTATATG 2027
|||| |||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1994 TTCTTTTTCTAGCTGACTTTCCCAAACAACTTTATTAGTTATTAACTTAATATG 2047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100451290545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5