BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481935
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 937 0.0
> AT2G30230.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G06980.1); Has
167 Blast hits to 167 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12897071-12897885
FORWARD LENGTH=815
Length=815
Score = 937 bits (507), Expect = 0.0
Identities = 548/568 (96%), Gaps = 1/568 (0%)
Strand=Plus/Plus
Query 1 AAAACTTAGAAATCTGTTAGCAAAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 60
||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAAACATAGAAATCTGTTTGC-AAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 111
Query 61 GGCTTGTGTACTTCCATGTGGAGCGTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 GGCTTGTGTACTTCCATGTGGAGCTTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 171
Query 121 CGTCGACGAGATCACTCGTCCAATGACCGCCGGTGAGATCCTTCAGGCGAATCCTAACCA 180
|||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 172 CGTCGACGAGATCACTAGTCCAATGACCGCCGGCGAGATTCTTCAGGCGAATCCTAACCA 231
Query 181 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTTCGTAAGATCTTGATCTTGTCCCCTGA 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 232 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTGCGTAAGATCTTGATCTTGTCTCCTGA 291
Query 241 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATACCGGATACTTCTTTGCCGGagaa 300
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 292 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATCCCGGATACTTCTATGCCGGAGAA 351
Query 301 gaagaagacaaagaagagaaaagaGGTCCGTTGCCGGAAAAAGCCTCTTGAAAGCGGCAG 360
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 352 GAAGAAAACAAAGAAGAGAAAAGAGCTCCGATGCCGGAAAAAGCCTCTTGAAAGCGGCAA 411
Query 361 GGACATTAATAGTGATCATATGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACATT 420
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 412 CGATATTAATAGTGATCATGTGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACGTT 471
Query 421 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 531
Query 481 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCATCAGTGTCCACGTGGCGGCCTCACCT 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 532 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCGTCAGTGTCCACGTGGCGGCCTCACCT 591
Query 541 TGATAGCATCACTGAGGATCTTAATTAA 568
||||||||||||||||||||||||||||
Sbjct 592 TGATAGCATCACTGAGGATCTTAATTAA 619
Score = 172 bits (93), Expect = 3e-42
Identities = 108/115 (94%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 600 tttttttttttGGATCCGGAAATCGGATTTTTATTTAACATTCCCGGGGAGAAAATTTTC 659
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 703 TTTTTTTTTTTGGATCCGG-AATCGGATTTTTATTTAACATGCCCGGTGAGAAAA-TTTC 760
Query 660 AAATATTTTATTTATTATGAAGTTAAAAACAAAACTATGTAATGTACTCATGTGG 714
|||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 761 AAATATTTTATTTATTATGAAGTTAAAACCAAAACTATGTACTGTTCTCATGTGG 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5