BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481937

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49245.1 | Symbols:  | Prefoldin chaperone subunit family pr...   501    2e-141


> AT1G49245.1 | Symbols:  | Prefoldin chaperone subunit family 
protein | chr1:18218750-18219261 FORWARD LENGTH=512
Length=512

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 347/382 (91%), Gaps = 12/382 (3%)
 Strand=Plus/Plus

Query  101  CTTCGTCGGGTCGCGAATTCGAGCTTGAGAAGGAGATAAAGAGGCAAGAGGTTTCGTTAG  160
            ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  125  CTTCGTCGGATCGCGAATTCGAGCTTGAGAAAGAGATAAAGAGGCAAGAGGTTTCGTTAG  184

Query  161  ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTGTCTACCAGAAAAACGGCAACCTCTTCT  220
            |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct  185  ATGAATTGAGCAGTCTCTCTTCTTCTCGAAGTATCTACCAGAAAAACGGTAACCTCTTCT  244

Query  221  TCCTCACATCTA-CCGAGAAAGCGAAAACCTCTGCGCAGAAACAACTTGACTACGCTAAA  279
            |||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  245  TCCTCACATC-AGCCGAGAAAGCGAAAATCTCTGCGCAGAAACAACTTGATTACGCTAAA  303

Query  280  TCTGAAATCAACAAGATTCGTTCGCAGACATAAACAATAAAGCTCTGTAGTTGCTGGAGA  339
            |||||||||||||||||||||||||||| |||||||||  || | | ||||||||| |||
Sbjct  304  TCTGAAATCAACAAGATTCGTTCGCAGAAATAAACAATGGAGATTTCTAGTTGCTGAAGA  363

Query  340  TCCAAAGAACTTCtttt--ttttttttATGATTT-TGT-TGATATAATTGATGCTATATC  395
            |||||  ||   || ||  ||||||||||||| | | | |||| || |||||||||||| 
Sbjct  364  TCCAAC-AAGG-CTGTTCCTTTTTTTTATGATGTATCTCTGAT-TA-TTGATGCTATATA  419

Query  396  AATTTTCATTAGTTCGTGTATGATCTTTGAATTGTCTTGGAATTGCTTGCAAATTACTTG  455
            ||||||||||||||||||||||||||| ||| | ||||||||||||||  ||||||||||
Sbjct  420  AATTTTCATTAGTTCGTGTATGATCTT-GAACTATCTTGGAATTGCTTT-AAATTACTTG  477

Query  456  ATTTTGATATGATAATCAGCTA  477
            ||||||||||||||||||||||
Sbjct  478  ATTTTGATATGATAATCAGCTA  499


 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 68/75 (91%), Gaps = 4/75 (5%)
 Strand=Plus/Plus

Query  1   GTTTCCGATGTGGGACTCTGGCTTTTACCAATTTTTCCTTTTTAAT--ATTCCTTGTAGA  58
           |||||||||||||||||||||||||||||||||||| |||||||||  |||  || ||||
Sbjct  1   GTTTCCGATGTGGGACTCTGGCTTTTACCAATTTTTTCTTTTTAATTTATTT-TTCTAGA  59

Query  59  AAACCTAAGAAAATT  73
           || ||||||||||||
Sbjct  60  AA-CCTAAGAAAATT  73



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5