BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481938
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30250.1 | Symbols: WRKY25, ATWRKY25 | WRKY DNA-binding prot... 2307 0.0
> AT2G30250.1 | Symbols: WRKY25, ATWRKY25 | WRKY DNA-binding protein
25 | chr2:12903236-12905198 REVERSE LENGTH=1608
Length=1608
Score = 2307 bits (1249), Expect = 0.0
Identities = 1396/1464 (95%), Gaps = 22/1464 (2%)
Strand=Plus/Plus
Query 1 AGTTTTATCCTCTTTTTCATTTCATAGATCAATTTCATAAAAAAGTTT-CTTCTTTTAGC 59
|||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1 AGTTTTATCCTCTTTTTCATTTCA-AGATCAATTTCATAAAAAAGTTTCCTT-TTTTAGC 58
Query 60 GAATCCTCTGTTTTCTGAAATCTTAAAGTTGTCTCCTTTAATTAAA-ACCATCATGTCTT 118
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 59 GAATCCTCTGTTTT-AGAAATCTTAAAGTTGTCTCCTTT-ATTAAAGACCATCATGTCTT 116
Query 119 CGACTTCTTTCACCGACCTCCTTGAATCTTCCGGCGTTGACTGTTACGAAGATGATGAAG 178
| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 117 CCACTTCTTTCACCGACCTTCTTGGTTCTTCCGGCGTTGACTGTTACGAAGATGATGAAG 176
Query 179 ACTTGATAGTTTCCGGGTCGATTTTTGGTGGGTATTATCAAGAGAGAACCGGGTCGGGTT 238
|||||| |||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||
Sbjct 177 ACTTGAGAGTTTCTGGGTCGAGTTTTGGTGGGTACTATCCAGAGAGAACCGGGTCTGGTT 236
Query 239 TACCTAAGTTCAAGACGGCTCAACCA-CATCCTATTCCGATTTCACCATCTTCACACAAC 297
|||||||||||||||||||||||||| || ||| |||||||||||| |||||| || |||
Sbjct 237 TACCTAAGTTCAAGACGGCTCAACCACCA-CCTCTTCCGATTTCACAATCTTCTCATAAC 295
Query 298 TTCACTTTCTCCGATTTCCTTGATTCTCCTCTGCTTCTTAGCTCCTCACACAGTTTGATA 357
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 296 TTCACTTTCTCCGATTACCTTGATTCTCCTCTGCTTCTCAGCTCCTCACACAGTTTGATA 355
Query 358 TCTCCAACAACAGGAACGTTTCCATTGCAAGGCTTTAATGGAACAACAAACAATCACTCG 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCTCCAACAACAGGAACGTTTCCATTGCAAGGCTTTAATGGAACAACAAACAATCACTC- 414
Query 418 GATCATTTTCCTTGGCAGCTACAATCGCAACCCTCAAACGCTTCTTCTGCTTTGCAAGAA 477
| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 415 -A-GATTTTCCCTGGCAGCTACAATCTCAACCATCAAACGCTTCTTCTGCTTTGCAAGAA 472
Query 478 ACATTTGGTGTTCAAGATCACCAGAAGAAGCAGGAGATGATTCCTCATGAGATTGCAACA 537
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 473 ACATATGGTGTTCAAGATCACGAGAAGAAGCAGGAGATGATTCCTAATGAGATTGCAACA 532
Query 538 CAAAACAACAATCAAAGTTTTGGAACAGATCGTCAGATAAAGATACCAGCATACATGGTG 597
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 533 CAAAACAACAATCAAAGTTTTGGAACAGAACGTCAGATAAAGATACCAGCATACATGGTG 592
Query 598 AGTAGGAACTCTAATGATGGTTATGGTTGGAGAAAATACGGTCAGAAACAAGTGAAGAAA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTAGGAACTCTAATGATGGTTATGGTTGGAGAAAATACGGTCAGAAACAAGTGAAGAAG 652
Query 658 AGCGAAAACCCTAGGAGTTACTTCAAGTGTACGTATCCTGATTGTGTTTCCAAGAAGATT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGCGAAAACCCTAGGAGTTACTTCAAGTGTACGTATCCTGATTGTGTTTCCAAGAAGATT 712
Query 718 GTTGAGACGGCTTCTGATGGACAGATCACTGAGATCATTTATAAAGGTGGTCATAATCAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTTGAGACGGCTTCTGATGGACAGATCACTGAGATCATTTATAAAGGTGGTCATAATCAT 772
Query 778 CCTAAGCCTGAGTTCACCAAGAGACCATCGCAATCTTCATTACCATCATCGGTTAATGGG 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 773 CCTAAGCCTGAGTTCACCAAGAGACCATCTCAATCTTCATTACCATCATCGGTTAATGGG 832
Query 838 AGGCGCTTGTTTAATCCTGCTTCTGTTGTTAGTGAACCACATGATCAATCAGAGAACTCT 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 833 AGGCGCTTGTTTAATCCTGCTTCTGTTGTTAGTGAACCTCATGATCAATCAGAGAACTCT 892
Query 898 TCGATTTCGTTTGACTATAGTGATCTTGAGCAGAAAAGCTTTAAATCAGAATATGGTGAG 957
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 893 TCGATTTCGTTTGACTATAGTGATCTTGAGCAGAAAAGTTTTAAATCAGAGTATGGTGAG 952
Query 958 ATTGATGAAGAGGAGGAACAACCTGAGATTAAGAGAATGAAAAGAGAAGGTGAAGATGAA 1017
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 953 ATAGATGAAGAGGAGGAACAACCTGAGATGAAGAGGATGAAAAGAGAAGGTGAAGATGAA 1012
Query 1018 GGAATGTCTATAGAAGTAAGCAGAGGAGTGAAAGAGCCAAGAGTTGTGGTTCAGACAATA 1077
|| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1013 GGGATGTCTATAGAAGTAAGCAAAGGAGTTAAAGAGCCAAGAGTTGTGGTTCAGACAATA 1072
Query 1078 AGTGATATTGATGTTCTTATAGATGGCTTTAGATGGAGGAAATATGGTCAAAAAGTTGTC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGTGATATTGATGTTCTTATAGATGGCTTTAGATGGAGGAAATATGGTCAAAAAGTTGTC 1132
Query 1138 AAGGGAAATACTAATCCAAGGAGCTACTACAAGTGCAC-TTACCAAGGTTGTGGAGTGAG 1196
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1133 AAAGGAAATACTAATCCAAGGAGCTACTACAAGTGCACATT-CCAAGGTTGTGGAGTGAA 1191
Query 1197 GAAGCAAGTGGAAAGATCCGCAGCAGACGAGAGAGCTGTTCTCACTACCTATGAAGGAAG 1256
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1192 GAAGCAAGTGGAAAGATCCGCAGCAGACGAGAGAGCAGTTCTCACTACCTATGAAGGAAG 1251
Query 1257 ACACAATCACGATATCCCAACCGCGCTACGTCGCTCATGAAAAACAACATTCTTGGGACT 1316
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1252 ACACAATCACGATATCCCAACCGCGCTACGTCGCTCGTGAAA-------TTATTGGGACT 1304
Query 1317 TAGTCACTAGTAATATCATTTAGGCTTTCTaaaaa-aaTAC-TCTTACTATGGCTTATCT 1374
|||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||
Sbjct 1305 TAGTCACTAGTAATATGATTTAGGCTTTCTAAAAACAAAAAATCTTACTATGGCTTATCT 1364
Query 1375 TTTGTGCTCATTCACAGTTTGTTTATTTGTTTGTTACACAGTCAATACTTTGTTTTGTAC 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTTGTGCTCATTCACAGTTTGTTTATTTGTTTGTTACACAGTCAATACTTTGTTTTGTAC 1424
Query 1435 AGAGTGGTGCTTAATAGttttttt 1458
||||||||||||| |||| |||||
Sbjct 1425 AGAGTGGTGCTTAGTAGTGTTTTT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5