BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481940
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30290.2 | Symbols: VSR2, AtVSR2 | VACUOLAR SORTING RECEPTOR... 2880 0.0
AT3G52850.1 | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1,... 508 6e-143
> AT2G30290.2 | Symbols: VSR2, AtVSR2 | VACUOLAR SORTING RECEPTOR
2 | chr2:12912519-12915912 REVERSE LENGTH=2107
Length=2107
Score = 2880 bits (1559), Expect = 0.0
Identities = 1772/1876 (94%), Gaps = 10/1876 (1%)
Strand=Plus/Plus
Query 1 ATGAGGGCGAAGAATGTACGGTTAGTTGTAATAGTATGGGT---GATGGGGTGGAGTTCC 57
|||||| ||| ||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 132 ATGAGGACGACGAATGTATGGTTAGTTGTAATAGTATGGGTAACGGTGGGGTGGAGTTCA 191
Query 58 TGCACAGGGAGGTTCGTTGTGGAGAAGAACAACCTCCGGGTGACTTCACCGGAGTCCATC 117
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 192 TGCACAGGGAGGTTCGTTGTGGAGAAGAACAACCTCCGAGTGACTTCGCCGGAGTCCATC 251
Query 118 AGAGGAGTCTACGAATGCGCCCTCGGAAATTTTGGCGTCCCTCAATACGGGGGAAGCATG 177
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 252 AGAGGAGTCTATGAATGTGCCCTCGGAAATTTTGGCGTCCCTCAATACGGCGGAAGCATG 311
Query 178 TCCGGTGCGGTGGTTTATCCTAAAGCTAACCAGAAAGGTTGCAAGAACTTTGACGATTTT 237
|||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct 312 TCCGGTGCGGTGGTTTATCCTAAAACTAATCAGAAAGCTTGCAAGAACTTTGACGATTTT 371
Query 238 GAGATCTCTTTCCGATCCAGAGTCGCTGGATTGCCCACATTCGTTCTCGTCGATCGAGGA 297
||||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 372 GAGATTTCTTTCAGATCCAGAGTCGCTGGATTGCCCACATTCGTTCTTGTGGATCGAGGA 431
Query 298 GATTGTTACTTCACTTTAAAGGCGTGGAACGCACAACGAGCTGGTGCCGCAACCATCTTG 357
||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 432 GATTGTTACTTTACTTTGAAGGCGTGGAATGCGCAACGAGCTGGTGCCGCAACCATCTTG 491
Query 358 GTAGCGGATAACAGGCCTGAGCAACTCATCACCATGGACGCACCAGAGGATGAGACGTCA 417
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GTGGCGGATAACAGACCCGAGCAACTCATCACCATGGACGCACCAGAGGATGAGACGTCA 551
Query 418 GATGCAGATTACCTACAAAATATCACAATTCCTTCAGCATTGGTGAGCAGATCTCTAGGG 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 552 GATGCAGATTACCTACAAAATATCACAATTCCTTCAGCATTAGTGAGCAGATCTCTAGGG 611
Query 478 AGTGCCATCAAAACGGCCATAGCTCATGGCGAGCCCGTTCATATAAGTCTAGACTGGCGG 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 612 AGTGCCATCAAAACGGCCATAGCTCATGGCGATCCCGTTCATATAAGTCTAGACTGGCGG 671
Query 538 GAGGCTCTTCCACACCCAAACGATCGAGTAGCTGACGAGCTATGGACCAATAGCAATGAT 597
|||||||||||||| |||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct 672 GAGGCTCTTCCACATCCAAACGATCGAGTAGCTTACGAGTTATGGACCAACAGTAATGAT 731
Query 598 GAATGCGGATCCAAATGTGACGCACAGAT-TGAGTTTCTCAAGAGATTCAAAGGAGCTGC 656
|||||||||||||||||||| |||||||| | |||||| ||||| || |||||||||||
Sbjct 732 GAATGCGGATCCAAATGTGATGCACAGATCCG-GTTTCTTAAGAGGTTTAAAGGAGCTGC 790
Query 657 TCAGATTCTTGAGAAAGGAGGCTACACTCGCTTCACTCCCCACTACATTACATGGTTTTG 716
|||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||
Sbjct 791 TCAGATTCTTGAGAAAGGAGGCTACACTCGCTTCACTCCCCATTACATCACCTGGTATTG 850
Query 717 TCCTGAAGCATTTCTGGCAAGTAGACAATGTAAATCACAATGCATCAA---TGGAAGATA 773
||||||||| |||||||||||||||||||||||| |||||||||| || |||||| ||
Sbjct 851 TCCTGAAGCGTTTCTGGCAAGTAGACAATGTAAAACACAATGCATTAATGGTGGAAGGTA 910
Query 774 TTGTGCTCCCGACCCGGAACAAGATTTCTCTAGAGGATACAATGGGAAAGACGTAATTAT 833
||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 911 TTGTGCTCCGGACCCTGAGCAAGATTTCTCCAGAGGATACAATGGAAAAGACGTAATTAT 970
Query 834 TCAAAATTTACGCCAAGCTTGCTTCTTTAGAGTGACCAATGAAAGTGGAAAGCCTTGGCT 893
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 971 TCAGAATTTACGCCAAGCTTGCTTCTTTAGAGTGACTAATGAAAGTGGAAAGCCTTGGCT 1030
Query 894 TTGGTGGGATTACGTCACCGACTTCGCCATTCGTTGTCCCATGAAAGAGGAGAAATACAA 953
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1031 TTGGTGGGATTATGTCACCGACTTCGCCATTCGTTGTCCCATGAAAGAGGAGAAGTACAA 1090
Query 954 CAAGAAATGTGCTGATCAAGTCATTCAATCTCTTGGAGTTGATGTGAAGAAAATTGACAA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CAAGAAATGTGCTGATCAAGTCATTCAATCTCTTGGAGTTGATGTGAAGAAAATTGACAA 1150
Query 1014 ATGCATTGGAGACATTGAAGCAAATACCGAAAATCCCGTTCTTAAAGAAGAACAAGATGC 1073
|||||| ||||||||||| |||||| | |||||||| ||||||||||||||||||| |||
Sbjct 1151 ATGCATCGGAGACATTGACGCAAATGCTGAAAATCCTGTTCTTAAAGAAGAACAAGTTGC 1210
Query 1074 ACAAGTTGGAAAAGGTC-CGCGAGGAGATGTGACGATACTACCAACTATTGTGATAAACA 1132
||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1211 ACAAGTTGGGAAAGG-CTCGAGAGGAGATGTGACGATACTACCAACTATTGTGATAAACA 1269
Query 1133 ATAGACAATATAGAGGGAAGTTGCAGAGATCGGCCGTGCTTAAGGCTCTTTGCTCAGGGT 1192
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 1270 ACAGACAATATAGAGGGAAATTGCAAAGATCGGCCGTGCTTAAGGCCCTTTGCTCAGGGT 1329
Query 1193 TTCGTGAGACGACTGAGCCACCAATTTGTTTAACCGAAGACATAGAAACCAATGAGTGTT 1252
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1330 TTCGTGAGACGACGGAGCCACCCATTTGTTTAACCGAAGACATAGAAACCAATGAGTGTT 1389
Query 1253 TACAAAACAACGGAGGGTGTTGGGAAGATAAGACAACCAACATTACAGCTTGCAGGGACA 1312
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1390 TACAAAACAATGGAGGGTGTTGGGAAGATAAAACAACCAACATTACAGCTTGCAGGGACA 1449
Query 1313 CTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTAGGTGACG 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1450 CTTTCAGAGGAAGAGTATGTCAATGTCCCATTGTTCAAGGTGTCAAGTTTCTCGGTGACG 1509
Query 1373 GTTATACACATTGTGAAGCTTCCGGGGCACTACGTTGTGGTATAAACAATGGAGGGTGTT 1432
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1510 GTTATACACATTGTGAAGCTTCGGGGGCACTACGTTGTGGCATAAACAATGGAGGATGTT 1569
Query 1433 GGAAACAAACTCAAATGGGAAAAACATATTCTGCTTGCCGTGATGATCATTCGAAAGGCT 1492
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1570 GGAAACAAACTCAAATGGGAAAAACATATTCCGCTTGCCGTGATGATCATTCGAAAGGCT 1629
Query 1493 GCAAATGTCCCCCCGGATTCAAAGGAGATGGACTCAAAGACTGCCAAGATGTGAATGAGT 1552
|||||||||| || ||||||| ||| |||||||||||||| ||| |||||||||||||||
Sbjct 1630 GCAAATGTCCTCCTGGATTCATAGGGGATGGACTCAAAGAGTGCAAAGATGTGAATGAGT 1689
Query 1553 GTGAGGAGAAAACAGCGTGTCAATGTCGCGGTTGCAAATGCAAGAACACATGGGGAAGCT 1612
||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||
Sbjct 1690 GTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCT 1749
Query 1613 ATGAATGTAGTTGCAGCGGAAGCTTGCTTTACATCAGAGAACACGACATTTGCATAAACA 1672
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1750 ATGAATGTAGTTGCAGCGGAAGCTTGCTTTACATAAGAGAACACGACATTTGCATAAATA 1809
Query 1673 AAGATGCAAGAGGAGATTTAAGTTGGGGAGTGATATGGATAATAATAATGGGATTAGGTG 1732
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 GAGATGCAAGAGGAGATTTCAGTTGGGGAGTGATATGGATAATAATAATGGGATTAGGTG 1869
Query 1733 CAGCTGCTTTAGGAGCTTACACTGTTTATAAATACAGAATTCGGACATATATGGACTCAG 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 CAGCTGCTTTAGGAGCTTACACTGTTTATAAATACAGAATTCGGACATATATGGACTCAG 1929
Query 1793 AGATAAGAGCGATAATGGCGCAATATATGCCTCTCGATAACCATCCCAACACTCAACTTT 1852
|||||||||| |||||||| ||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 1930 AGATAAGAGCTATAATGGCACAATACATGCCTCTTGATAATAATCCCAATACTCAACTTT 1989
Query 1853 CTTCTCAACTAGAGTT 1868
||||||||||||||||
Sbjct 1990 CTTCTCAACTAGAGTT 2005
> AT3G52850.1 | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1,
ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor
homolog 1 | chr3:19587821-19591947 FORWARD LENGTH=2307
Length=2307
Score = 508 bits (275), Expect = 6e-143
Identities = 1223/1667 (73%), Gaps = 120/1667 (7%)
Strand=Plus/Plus
Query 64 GGG-AGGTTCGTTGTGGAGAAGAACAACCTCCGGGTGACTTCACCGGAGTCCATCAGAGG 122
||| || |||||||| ||||||||||| ||| || || ||||| || || |||| |||
Sbjct 232 GGGTAGATTCGTTGTTGAGAAGAACAATCTCAAAGTTACATCACCTGATTCGATCAAAGG 291
Query 123 -AGTCTACGAATGCGCCCTCGGAAATTTTGGCGTCCCTCAATACGGGGGAAGC-AT-GTC 179
| | |||||||| ||| | || ||||| || || ||||||||||| || | | | ||
Sbjct 292 TA-TTTACGAATGTGCCATTGGTAATTTCGGAGTTCCTCAATACGGTGGTA-CTTTAGT- 348
Query 180 CGGTGCGGTGGTTTATCCTAAAGCTAACCAGAAAGGTTGCAAGAA-CT-TTGACGATTTT 237
||| | || || ||||||||| | || ||||||| ||| || || || | ||||||
Sbjct 349 CGGCACCGTCGTCTATCCTAAATCCAATCAGAAAGCTTGTAA-AAGCTACT-CCGATTTC 406
Query 238 GAGATCTCTTTCCGATCCAGAGTCGCT-G--GATTGCCCACATTCGTTCTCGTCGATCGA 294
|| ||||| ||| ||||| | | || | |||| || || || || || |||||||
Sbjct 407 GATATCTCCTTCAAATCCA-A-AC-CTGGACGATTACCAACTTTTGTCCTTATCGATCGT 463
Query 295 GGAGATTGTTACTTCACTTT-AAAGGCGTGGA-ACGCACAACGAGCTGGTGCCGCAACCA 352
|||||||||||||||||||| ||| || |||| | || |||| |||||| || ||| | |
Sbjct 464 GGAGATTGTTACTTCACTTTGAAA-GCATGGATA-GCTCAACAAGCTGGAGCAGCAGCGA 521
Query 353 T-CTTGGTAGCGGATA--ACAGGCCTGAGCAACTCATCACCATGGACGCACCAGAGGATG 409
| ||| ||||| |||| | | | |||||| | | || || ||||| |||| || || |
Sbjct 522 TACTT-GTAGCTGATAGTA-AAG-CTGAGCCATTGATTACAATGGATACACCTGAAGAAG 578
Query 410 AGACGTCAGATGCAGATTACCTACAAAATATCACAATTCCTTCAGCAT-TGGTGAGC-AG 467
| | || ||||| ||||| || || || || || |||||||| || | | | | | |
Sbjct 579 ATAAATCTGATGCGGATTATCTTCAGAACATTACCATTCCTTCTGC-TCTCATTA-CTAA 636
Query 468 ATCTCTAGGGAGTGCCA-TCA-AAA--CGGC-CATAGCTC-ATGGCGAGCCCGTTCATAT 521
| | | |||| | || | | ||| | || | | | | ||| || ||| | ||
Sbjct 637 AAC-ATTGGGA--GACAGT-ATAAAGTCTGCTC-TTTC-CGGTGGTGATATGGTTAACAT 690
Query 522 -AAGTCTAGACTGG-CGGGAGGCTCTTCCACACCCAAACGATCGAGTAGCTG-ACGAGCT 578
||| ||||| ||| | ||| | ||||||| || | || || |||| | | || ||
Sbjct 691 GAAG-CTAGATTGGAC-TGAGTCGGTTCCACATCCTGATGAGCGTGTAG-AGTATGAACT 747
Query 579 ATGGACCAATAGCAATGATGAATG-CGGATCCAAATGTGACGCACAGATTGAGTTTCTCA 637
||||| ||||||||||| || || ||| || ||||| | ||||||||||||||||
Sbjct 748 GTGGACTAATAGCAATGACGAGTGTGGGA-AGAAGTGTGATACTCAGATTGAGTTTCTCA 806
Query 638 AGAGA-TTCAAAGGAGCTGCTCAGATTCTTGAGAAAGGAGG-CTACACTC-GCTTCACTC 694
||| | || ||||||||||||||||||||||||||||| || | | |||| | ||||| |
Sbjct 807 AGA-ATTTTAAAGGAGCTGCTCAGATTCTTGAGAAAGGTGGGC-ATACTCAG-TTCACGC 863
Query 695 CCCACTACATTACATGGTTTTGTCCTGAAGCATTT-C-TGGCAAGTAGACAATGTAAATC 752
| || || ||||| |||| ||||||||||| ||| | | | | ||| ||| ||||| ||
Sbjct 864 CACATTATATTACTTGGTACTGTCCTGAAGCGTTTACGTTG-A-GTAAACAGTGTAAGTC 921
Query 753 ACAATGCATCAA---TGGAAGATATTGTGCTCCCGACCCGGAACAAGATTTCT-CTAGAG 808
|| |||||||| |||||| |||||||| || || || || || ||||| | | | ||
Sbjct 922 TCAGTGCATCAACCATGGAAGGTATTGTGCGCCTGATCCTGAGCAGGATTT-TACGAAAG 980
Query 809 GATACAATGGGAAAG-ACGTAATTATTCAAAATTTACGCCAAGCTTGCT-TCTTTAGAGT 866
| || |||| |||| | || || |||| ||| |||| || ||||| | ||| |||||
Sbjct 981 GGTATGATGG-AAAGGATGTTGTTGTTCAGAATCTACGTCAGGCTTG-TGTCTACAGAGT 1038
Query 867 GACCAATGAAAGTGGAAAGCCTTGGCTTTGGTGGGATTACGTCACCGACTTCGCCATTCG 926
|| ||||| | || ||||| ||| | |||||||| || || || ||||| || || ||
Sbjct 1039 GATGAATGATACCGGTAAGCCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCTATCCG 1098
Query 927 TTGTCCCATGAAAGAGGAGAAATACAACAAGAAATGTGCTGATC-AAGTCATTCAA-TCT 984
||||| ||||| ||| |||| |||| |||| |||| || ||| || | ||| || ||
Sbjct 1099 GTGTCCAATGAAGGAGAAGAAGTACACCAAGGAATGCGCAGATGGAATT-ATT-AAGTCC 1156
Query 985 CTTGG-AGTTGATGTGAAGAAAATTG-ACAAATGCATTGGAGACATTGAAGCAAATACCG 1042
||||| | ||||| | || ||| || |||| || || |||||| ||||||| || |
Sbjct 1157 CTTGGCA-TTGATCTCAA-AAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGTGG 1214
Query 1043 AAAATCCC-GTTCTTAAAGAAGAACAAGA-TGCACAAGTT-GGAAAAGGT-CCGCGAGGA 1098
| || ||| |||||||||| ||| || || | |||| | | || |||||| || || |||
Sbjct 1215 AGAA-CCCAGTTCTTAAAGCAGAGCAGGAGT-CACA-GATAGGCAAAGGTTCC-CGTGGA 1270
Query 1099 GATGTGACGATACTACCAACTATTGT-GATAAACAATAGACAATATAGAGGGAAGTTGCA 1157
|| ||||| ||||| |||||| |||| | | ||||| |||||||| ||||| || ||| |
Sbjct 1271 GACGTGACTATACTCCCAACTCTTGTCG-TGAACAACAGACAATACAGAGGTAAATTGGA 1329
Query 1158 GAGATCGGCC-GTGCTTAAGGCTCTTTGCTCAGGGTTT-CGTGAGACGACTGAGCCACCA 1215
| | || | |||||||||||| | || || |||||| | ||| | || || ||| |
Sbjct 1330 AA-AGGGGGCAGTGCTTAAGGCTATGTGTTC-GGGTTTTCAAGAGTCAACGGAACCAGCT 1387
Query 1216 ATTTGT-TTAACCGAAGACATAGAAACCAATGAGTGTTTACAAAACAACGGAGGGTGTTG 1274
|| ||| ||| | ||||| | ||||| ||||| ||||| |||||||||| || || ||
Sbjct 1388 ATCTGTCTTA-CTGAAGATTTGGAAACTAATGAATGTTTGGAAAACAACGGTGGATGCTG 1446
Query 1275 GGAAGATAA-GACAACCAACATTACAGCTTGCAGGGACACTTTCAGAGGAAGAGTATGTC 1333
| |||| || | | |||||||||| || |||||||| ||||| || |||||| | |||
Sbjct 1447 GCAAGACAAAG-CTGCCAACATTACTGCATGCAGGGATACTTTTAGGGGAAGATTGTGTG 1505
Query 1334 AATGTCCC-ATTGTTCAAGGTGTCAAGTTTC-TAGGTGACGGTTATACACATTGTGAAGC 1391
| || ||| | |||||||||||| || || | | ||||||||||| || || || ||||
Sbjct 1506 AGTG-CCCTACTGTTCAAGGTGTTAAATT-CGTTGGTGACGGTTACACTCACTGCAAAGC 1563
Query 1392 TTCCGGGGCACTACGTTGTGGTATAAACAATGGAGGGTGTTGGAAACAAACTCAAA-TGG 1450
|| || || | | ||||||||| ||||||||||| || |||| | || | | | |||
Sbjct 1564 CTCTGGAGCTTTGCATTGTGGTATCAACAATGGAGGATGCTGGAGAGAATCCCGAGGTGG 1623
Query 1451 GAAAAACATATTCTGCTTGCCGT-GATGATCATTCGAAAGGCT-GCAAATGTCCCCCC-G 1507
| | || ||||||||| || ||||||||||| ||||| | ||||||| ||| | |
Sbjct 1624 CTTCA-CTTACTCTGCTTGC-GTAGATGATCATTC-AAAGGATTGCAAATG-CCCACTTG 1679
Query 1508 GATTCAAAGGAGATGGACTCAAAGA-CTGCCAAGATGTGAATGAGTGTGAGGAGAAAACA 1566
| ||||| || |||||| | || || ||| |||||||| | ||||| | || |||||
Sbjct 1680 GGTTCAAGGGCGATGGAGTGAA-GAACTGTGAAGATGTGGACGAGTGCAAAGAAAAAACG 1738
Query 1567 GCGTGTCAATGTCGC-G-GTTGCAAATGCAAGAACACATGGGGAAGCTATGAATGTAGTT 1624
| ||| || || | | | || | ||||| || ||||| |||||||| |||||||| || |
Sbjct 1739 GTGTGCCAGTGCC-CAGAGT-GTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCT 1796
Query 1625 GCAGCGGAA-GCTT-GCTTTACAT-CAGAGAACACGACATTTGCATA 1668
||||| || | || ||||||||| | | || ||||||| |||||||
Sbjct 1797 GCAGC--AACGGTTTGCTTTACATGC-GTGAGCACGACACTTGCATA 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5