BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481943
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30320.1 | Symbols: | Pseudouridine synthase family protein... 2418 0.0
> AT2G30320.1 | Symbols: | Pseudouridine synthase family protein
| chr2:12925728-12927896 REVERSE LENGTH=1533
Length=1533
Score = 2418 bits (1309), Expect = 0.0
Identities = 1462/1535 (95%), Gaps = 13/1535 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTCTCGTTTCTACGAATTCCAATTCCTTCACGGGTCTTCTGGTACCCGACCCGA 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCAGTCTCGTTTCTACGAATTCCAATTCCATCGCGGGTCTTCTGGTACCCGACCCGA 60
Query 61 ATTATTCGGGCCACACCAGCGTTAGTACGATTCTCTTCCTCCGCCGCATTTCAGCCGTCG 120
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 CTTATTCGGGTCACACCAGCGTTATTACGATTCTCTTCCTCCGCCGCATTTCAGCCGTCT 120
Query 121 TCTACTTCACTCTCACCGTCTTCTTCCGACAACTTTCTCGCCGATAAATGGGAATCATAT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTACTTCACTCTCACCGCCTTCTTCCGACAACTTTCTCGCCGATAAATGGGAATCATAT 180
Query 181 CGGAAGAAGAAGGTCGTCATTCGAATTGGATACGTGGGTACTGATTACAGAGGTTTGCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 CGGAAGAAGAAGGTCGTCATTCGAATTGGATACGTGGGTACTGATTACAGAGGCTTACAG 240
Query 241 ATTCAAAGAGACGACCCTTCTCTCAAAACTATTGAGGGTGAATTGGAAGTTGCTATATAT 300
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 241 ATTCAAAGAGACGACCCTTCTATCAAAACTATTGAGGGTGAGTTGGAAGTTGCTATATAC 300
Query 301 AAGGCAGGTGGGATTAGAGATAGTAACTATGGTGATCTTCATAAGATTGGTTGGGCTAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGCAGGTGGGATTAGAGATAGTAACTATGGTGATCTTCATAAGATTGGTTGGGCTAGA 360
Query 361 AGTAGTCGAACTGATAAAGGAGTTCATTCTTTGGCAACGTCAATATCGCTGAAAATGGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTAGTCGAACTGATAAAGGAGTTCATTCTTTGGCAACGTCAATATCGCTGAAAATGGAG 420
Query 421 ATCCCTGAGACGGCGTGGAAGGATGATCCTCAGGGCACTGTTCTTGCTAAATGCATTAGC 480
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 ATCCCTGAGACAGCGTGGAAGGATGATCCTCAAGGCACTGTTCTTGCTAAATGCATTAGC 480
Query 481 AAGCACCTTCCCGAGAATATCAGAGTTTTCAGTGTTTTACCGTCAAATAGGAGATTTGAT 540
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACACCTTCCTGAGAATATTAGAGTTTTCAGTGTTTTACCGTCAAATAGGAGATTTGAT 540
Query 541 CCCCGAAGGGAGTGTACGCTGCGGAAATATTCTTATCTCCTCCCTGTTGATGTTATTGGG 600
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 541 CCTCGAAGAGAGTGTACGCTACGGAAATATTCTTACCTCCTCCCTGTTGATGTTCTTGGG 600
Query 601 ATCAAGAATAGCTTTACTTCAAATGAGATTGACTATCACATTACGGATTTTAATAAAATT 660
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 601 ATCAAGAATAGCTTTACTTCAGATGAGATTGACTATCACATTACGGATTTCAACGAAATT 660
Query 661 CTAAATGAATTTGAGGGTGAATATCCTTTCCATAACTATACACAGCGGTCACGGTACAGA 720
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTAAAAGAATTTGAGGGTGAATATCCTTTCCATAACTATACACAGCGGTCACGGTACAGA 720
Query 721 AGGAAATCGGAACAAAAAATAAAACAAAGAAACGGACGCCCTCCAAGA-ATACCAAAAGC 779
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
Sbjct 721 AGGAAATCGGAACAAAAAATAAAGCAAAGAAACGGACGCCCTCCAAGAGA-ACCAAAATC 779
Query 780 AATCAAAGCATcagaatcagagtttacagaggagaaccacagagaaattg-a-a-gaaga 836
|||||||||||||||||||||||||| |||||||||||||| |||||||| | | |||||
Sbjct 780 AATCAAAGCATCAGAATCAGAGTTTAGAGAGGAGAACCACATAGAAATTGGAGAAGAAGA 839
Query 837 agaagaaaaagaaaTGGATGGCGAATCTGATGAACATAT--TC-CTCCTGATTCTGATAA 893
||||||||||||| ||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct 840 AGAAGAAAAAGAAGTGGATGGTGAATCTGATGAACATGTGGTTACTCCTGATTCTGATAA 899
Query 894 TTCTCAGGTGAACAGCCGTGCAAAATGGCTTTACGAGCCAGATGAGACAGATAAGCTGAG 953
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 900 TTCTCAGGTGTACAGTCGTGCAAAATGGCTGTACGAGCCAGATGAGACAGATAAGATTAG 959
Query 954 TGGTGCTCATTTCAGAAAAGTGTTTCGATGTCGTAGTGGAAAGCTAGAGAATTCACTTGG 1013
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGGTGCTCATTTCAGGAAAGTGTTTCGATGTCGTAGTGGAAAGCTAGAGAATTCACTTGG 1019
Query 1014 ATTCGGCTTTGTCGAGATCTCCATATGGGGAGAATCATTCATGTTGCATCAGATACGGAA 1073
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATTCGGCTTTGTGGAGATCTCCATATGGGGAGAATCATTCATGTTGCATCAGATACGGAA 1079
Query 1074 GATGATTGGAACGGCCGTGGCAGTGAAGAGAGAGCTGCTTCCTAGAGACATCATAAGACT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GATGATTGGAACGGCCGTGGCAGTGAAGAGAGAGCTGCTTCCTAGAGACATCATAAGACT 1139
Query 1134 ATCTCTAAACAAGTTCACAAGAATCGTTTTGCCTCTTGCTCCATCTGAAGTACTAATCCT 1193
|||||| ||||||||||||||||| || ||||| || ||||||||||||||||| |||||
Sbjct 1140 ATCTCTGAACAAGTTCACAAGAATTGTCTTGCCACTGGCTCCATCTGAAGTACTGATCCT 1199
Query 1194 GAGAGGAAACAGTTTCGAAGTGCGTAGATTGCCTGAGAGGCCGGGGACGGAAGCAAC-GG 1252
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1200 GAGAGGAAACAGTTTCGAAGTGCGTAGATTGCCTGAGAGGCCGGGGATGGAAGCAACAGG 1259
Query 1253 TTGAATCAGAAGAAGTTGAGAAGGAAATAGAGGAGTTTTACAGAGCAGTGATGGTTCCAC 1312
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 T-GAATCAGAAGAAGTGGAGAAGGAGATAGAGGAGTTTTACAGAGCAGTGATGGTTCCAC 1318
Query 1313 AGGTGAGTAGATTCTTGGATTCTGAGAAATCTCCATGGAAAGAGTGGGTGGAGCATTTAG 1372
||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1319 AGGTGAGTATATTCCTGGATTCTGAGAAATCTCCATGGAAAGAGTGGGTGGATCATTTGG 1378
Query 1373 ATAGGAATGATGGTTTGATAGACGAGGAACTGGAAGATGTAAGGAAAGGTTGGGAGGAGT 1432
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1379 ATAGGAATGATGGTTTGATAGACGAGGAATTGGAAGATGTAAGGAAAGGTTGGGAGGAGT 1438
Query 1433 GGAAAGCCGCGAAGCCATGGATGAATTTGAAGAAGACAGAAGATGGTGAAGAAG--T-GA 1489
||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 1439 GGAAAGCTGCGAAGCCATGGATGAATTTGAAGAAGACAGAAGATGATGAAGAAGCATTGA 1498
Query 1490 GTTCTGTTTCAGTACCTATTCATCAAGCTCTATGA 1524
|||||||||||||||||||||||||||||||||||
Sbjct 1499 GTTCTGTTTCAGTACCTATTCATCAAGCTCTATGA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5