BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481945
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30340.1 | Symbols: LBD13 | LOB domain-containing protein 13... 1389 0.0
AT4G33660.1 | Symbols: | unknown protein; Has 30201 Blast hits... 60.2 3e-08
> AT2G30340.1 | Symbols: LBD13 | LOB domain-containing protein
13 | chr2:12931219-12932582 REVERSE LENGTH=936
Length=936
Score = 1389 bits (752), Expect = 0.0
Identities = 874/932 (94%), Gaps = 11/932 (1%)
Strand=Plus/Plus
Query 1 CTCAAAAACAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CTCTAAAATAAACTTATAAATAGCATGCGTGAATGTCCCGAGAAAGGGAAGGATTTGGAG 70
Query 61 AGTACTACGAGATCGTTAAGAAGATAAAGAAAGATCCAACCTTCGA-ATCGACGACGGAT 119
|||||||||||| ||| ||||||||||||||||||||| ||||||| | | |||||||||
Sbjct 71 AGTACTACGAGACCGTCAAGAAGATAAAGAAAGATCCAGCCTTCGAGA-CAACGACGGAT 129
Query 120 CATGCCGTGATGGGTATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CATGCCGTGATGGGAATCAGGAGACATGTGGCGGTGCCTCCGGGGACAACGTTGAACACC 189
Query 180 GTGACTCCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 239
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GTAACACCATGCGCCGCTTGTAAGCTCCTCCGCCGTCGTTGTGCGGAGGAGTGTCCTTTC 249
Query 240 TCGCCTTACTTCTCGCCGCACGAACCTCACAAGTTCGCCGCCGTTCATAAAGTCTTCGGT 299
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 250 TCGCCTTACTTCTCGCCGCATGAACCTCACAAGTTCGCTGCCGTTCATAAAGTCTTTGGT 309
Query 300 GCAAGTAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCAAGCAACGTCTCCAAGATGCTTCTGGAAGTGGGAGAGAGCCAAAGAGGAGACGCAGCA 369
Query 360 AACAGTTTAGTATACGAAGCAAACCTCAGACTTAGAGATCCAATCTACGGTTGCATGGGA 419
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 370 AATAGTTTAGTATACGAAGCAAACCTAAGACTTAGAGATCCAATCTACGGTTGCATGGGA 429
Query 420 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTCCAATCCGAACTCACCG-CCGTCCG 478
||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 430 GCAATCTCAGCTCTTCAACACCACATTCAGTCTCTTCAATCCGAACTCAC-GACCGTCCG 488
Query 479 TACAGATATCCTCCGCCACAAATACCGAGAAGCCACCACCATCACTTCTCTCcaaaacaa 538
||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 489 TACGGAAATCCTACGCCACAAATACCAAGAAGCCACCACCATCACTTCTCTCCAAAACAA 548
Query 539 caacaacttccacaacactacaacaacTTCATCAGTGAGTTGTGATCATCATGATCTCGG 598
| ||| ||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 549 C------TTCAACAGCACTACAACAACTTCATCAGTGAGTTGTGATCAGCATGCTCTCGC 602
Query 599 GGCAGCGATTCTTCTCCCACCACCACCGCCACCGCCTCCTCCTCCACGACCACCGAGGTT 658
| |||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 603 CTCGGCGATTCTCCTCCCACCACCACCGCCACCACCTCCTACTCCACGACCACCAAGGTT 662
Query 659 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCAGCTTCTTTGCCGTCTCCGTCCAT 718
|||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 663 GTTGTCCTCTCAGCCAGCTCCACCGCCTACGCCACCCGTTTCTTTGCCATCTCCGTCCAT 722
Query 719 GGTTGTGTCGTCCTCTTCGTCTTCTAATTCATCAGCTACCAATTCTATGTATAATCCTCC 778
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 723 GGTTGTGTCGTCCTCTTCATCTTCTAATTCATCTGCCACCAATTCTATGTATAATCCTCC 782
Query 779 TCCGTCTTCGGCTGCTGGATACAGTAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 838
||| |||||| | |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 783 TCCATCTTCGACGGCTGGATATAGCAATTCTCTGTCCAGTGATAATAATGTTCATTACTT 842
Query 839 TGATTAAATCAGAATTATGTGTTTCTTAAtttttttAAAAATGCTATTATAGCCCTTATC 898
|||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||
Sbjct 843 TGATTAAATCAGAATTCTGTGTTCCTTAATTTTTTTAAAA-TACTATTATAGCCCTTATT 901
Query 899 ATAAGCTACGAGATTGAATGGTGATCCATGTT 930
||||||||||||||||||||||||||||||||
Sbjct 902 ATAAGCTACGAGATTGAATGGTGATCCATGTT 933
> AT4G33660.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16167286-16167951
REVERSE LENGTH=544
Length=544
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 618 CCACCACCGCCACCGCCTCCTCCTCCACGACCACC 652
|||||||||||||||||||||||||||| ||||||
Sbjct 226 CCACCACCGCCACCGCCTCCTCCTCCACCACCACC 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5