BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481949

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related | chr2:12...   529    2e-149


> AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related | chr2:12940455-12942409 
REVERSE LENGTH=1057
Length=1057

 Score =  529 bits (286),  Expect = 2e-149
 Identities = 389/434 (90%), Gaps = 26/434 (6%)
 Strand=Plus/Plus

Query  1    ATGGGTTTCGAGAGACcatcatcatc-ttcatcattattgtcatcatcattaccatcatc  59
            ||||||||||||||| |||||||||| || ||||||||| ||||||||||||||||||||
Sbjct  243  ATGGGTTTCGAGAGAACATCATCATCATT-ATCATTATTATCATCATCATTACCATCATC  301

Query  60   attaccaa-catcaGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATATATTACTACTCT  118
            |||| ||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct  302  ATTA-CAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCT  360

Query  119  TCTTCGTCCTCTGTGTGATTACCACCTTCA-TAATAACTCCCACTTCG-CTTTCTTCTCC  176
            |||||||||||||||| ||| ||||||||| || |||||||||||||| ||| |||||||
Sbjct  361  TCTTCGTCCTCTGTGTCATTGCCACCTTCACTA-TAACTCCCACTTCGACTT-CTTCTCC  418

Query  177  ATATATTAGGAATTCTAACTCTGGGAAACTAGGGAACTTCTATCCACAGGTTCGTAAGCT  236
            ||||| |||||||||||||||||||| |||||||||||||||| || |||||||||| ||
Sbjct  419  ATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGTTCGTAAACT  478

Query  237  -TTT-TAGCTCTTACTTT-TT---TG--C---C-----G--ACTGTGACGGCATGTCGAG  278
             ||| || |||||||| | ||   ||  |   |     |  |||||||||||||||||||
Sbjct  479  GTTTATACCTCTTACTCTCTTGCGTGATCTAACAATCAGCGACTGTGACGGCATGTCGAG  538

Query  279  ACTGACTGGTCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTCG  338
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  539  ACTGACTGGGCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTGG  598

Query  339  TTTAAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTCCGTTCACCTCTCGTGGG  398
            ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  599  TTTCAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTTCGTTCACCACTCGTGGG  658

Query  399  ACCCTGCATTGCTT  412
            ||||||| ||||||
Sbjct  659  ACCCTGCCTTGCTT  672



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34611327283


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5