BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481949 Length=714 Score E Sequences producing significant alignments: (Bits) Value AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related | chr2:12... 529 2e-149 > AT2G30370.1 | Symbols: CHAL, EPFL6 | allergen-related | chr2:12940455-12942409 REVERSE LENGTH=1057 Length=1057 Score = 529 bits (286), Expect = 2e-149 Identities = 389/434 (90%), Gaps = 26/434 (6%) Strand=Plus/Plus Query 1 ATGGGTTTCGAGAGACcatcatcatc-ttcatcattattgtcatcatcattaccatcatc 59 ||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||| Sbjct 243 ATGGGTTTCGAGAGAACATCATCATCATT-ATCATTATTATCATCATCATTACCATCATC 301 Query 60 attaccaa-catcaGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATATATTACTACTCT 118 |||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 302 ATTA-CAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCT 360 Query 119 TCTTCGTCCTCTGTGTGATTACCACCTTCA-TAATAACTCCCACTTCG-CTTTCTTCTCC 176 |||||||||||||||| ||| ||||||||| || |||||||||||||| ||| ||||||| Sbjct 361 TCTTCGTCCTCTGTGTCATTGCCACCTTCACTA-TAACTCCCACTTCGACTT-CTTCTCC 418 Query 177 ATATATTAGGAATTCTAACTCTGGGAAACTAGGGAACTTCTATCCACAGGTTCGTAAGCT 236 ||||| |||||||||||||||||||| |||||||||||||||| || |||||||||| || Sbjct 419 ATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGTTCGTAAACT 478 Query 237 -TTT-TAGCTCTTACTTT-TT---TG--C---C-----G--ACTGTGACGGCATGTCGAG 278 ||| || |||||||| | || || | | | ||||||||||||||||||| Sbjct 479 GTTTATACCTCTTACTCTCTTGCGTGATCTAACAATCAGCGACTGTGACGGCATGTCGAG 538 Query 279 ACTGACTGGTCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTCG 338 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 539 ACTGACTGGGCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTGG 598 Query 339 TTTAAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTCCGTTCACCTCTCGTGGG 398 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 599 TTTCAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTTCGTTCACCACTCGTGGG 658 Query 399 ACCCTGCATTGCTT 412 ||||||| |||||| Sbjct 659 ACCCTGCCTTGCTT 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34611327283 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5