BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481950
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30390.2 | Symbols: FC2 | ferrochelatase 2 | chr2:12951062-1... 1338 0.0
> AT2G30390.2 | Symbols: FC2 | ferrochelatase 2 | chr2:12951062-12954114
REVERSE LENGTH=1878
Length=1878
Score = 1338 bits (724), Expect = 0.0
Identities = 776/801 (97%), Gaps = 3/801 (0%)
Strand=Plus/Plus
Query 867 CAGGTTGTAATATTTTTCAGTGCACATGGCGTGCCTCTTGCATATGTCGAAGAAGCCGGT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAGGTTGTAATATTTTTCAGTGCACATGGCGTGCCTCTTGCATATGTCGAAGAAGCCGGT 1077
Query 927 GATCCTTACAAGGCAGAGATGGAAGAATGTGTTGATCTGATCATGGAGGAATTAGACAAG 986
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1078 GATCCTTACAAGGCAGAGATGGAAGAATGTGTTGATCTAATCATGGAGGAATTAGACAAG 1137
Query 987 AGAAAGATAACTAATGCTTACACCCTTGCTTATCAGAGCAGAGTTGGACCAGTGGAATGG 1046
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1138 AGAAAGATAACTAATGCTTACACTCTTGCTTATCAGAGCAGAGTTGGACCAGTTGAATGG 1197
Query 1047 CTGAAACCATACACTGAAGAAGCCATTACTGAACTTGGTAAAAAAGGTGTTGAAAATCTT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTGAAACCATACACTGAAGAAGCCATTACTGAACTTGGTAAAAAAGGTGTTGAAAATCTT 1257
Query 1107 CTGGCTGTACCCATAAGCTTTGTGAGCGAGCACATTGAAACTCTGGAGGAGATAGATGTT 1166
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTGGCTGTACCCATAAGTTTTGTGAGCGAGCACATTGAAACTCTGGAGGAGATAGATGTT 1317
Query 1167 GAGTATAAAGAGTTGGCTTTAAAGTCTGGTATCAAAAACTGGGGGCGAGTACCTGCGCTA 1226
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GAGTATAAAGAGTTGGCTTTGAAGTCTGGTATCAAAAACTGGGGGCGAGTACCTGCTCTA 1377
Query 1227 GGAACAGAACCCATGTTTATATCTGACTTGGCAGATGCTGTTGTGGAAAGTCTTCCTTAT 1286
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 GGAACAGAACCTATGTTTATATCTGACTTGGCAGATGCTGTTGTGGAAAGTCTTCCATAC 1437
Query 1287 GTTGGAGCTATGGCAGTCTCAAACCTTGAAGCTCGACAGTCGTTAGTTCCGCTCGGGAGT 1346
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GTTGGTGCTATGGCTGTCTCAAACCTTGAAGCTCGACAGTCGTTAGTTCCGCTCGGGAGT 1497
Query 1347 GTAGAAGAACTATTAGCAACATATGATTCACAGAGGAGGGAGTTACCAGCGCCGGTGACA 1406
||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1498 GTAGAAGAATTATTAGCAACGTATGATTCACAGAGAAGGGAGTTACCAGCACCGGTGACA 1557
Query 1407 ATGTGGGAATGGGGATGGACAAAAAGTGCAGAAACATGGAACGGAAGAGCAGCAATGTTA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATGTGGGAATGGGGATGGACAAAAAGTGCAGAAACATGGAACGGAAGAGCAGCAATGTTA 1617
Query 1467 GCGGTGCTAGCACTCTTGGTGCTCGAAGTCACCACCGGAAAAGGGTTTCTGCATCAGTGG 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GCGGTGCTAGCACTCTTGGTGCTCGAAGTCACCACCGGAAAAGGGTTTCTGCATCAGTGG 1677
Query 1527 GGGATCTTGCCTTCATTATAATAAAGA-A-CATATAGTCTTTTTCTCTATCACAAACCAA 1584
|| |||||||||||||||||||||||| | | |||||||||||||||||| | ||||| |
Sbjct 1678 GGCATCTTGCCTTCATTATAATAAAGATAACGTATAGTCTTTTTCTCTATGA-AAACCCA 1736
Query 1585 ATCCAAGAATCCAAATGTGAGCTTTCACATGTGGAATAAGGCCAGCTATGTTACTATACT 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1737 ATCCAAGAATCCAAATGTGAGCTTTCACATGTGGAATAAGGCCAGCTATGTTATTATGCT 1796
Query 1645 CTCTTCTTCTTTGTTGTAGAA 1665
|||||||||| ||||||||||
Sbjct 1797 CTCTTCTTCTCTGTTGTAGAA 1817
Score = 1317 bits (713), Expect = 0.0
Identities = 821/873 (94%), Gaps = 8/873 (1%)
Strand=Plus/Plus
Query 1 TTTTGGCAATGAATTGCCCAGCCATGACTGcttctccttcttcttgctcttcttcttcct 60
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 TTTTTGCAATGAATTGCCCAGCCATGACTGCTTCTCCTTCTTCTTCCTCTTCTTCTTCCT 181
Query 61 gttcctc-ttactccacctttcgtcctccactcttGCCACAATTGAGTAATGATTCACAG 119
|| | || || || || ||||||||||||||||||||||||||| ||||||||
Sbjct 182 ACTCAACGTT--TCGTCC--TCCTCCTCCACTCTTGCCACAATTGAGTAACGATTCACAA 237
Query 120 AGATCTATTG-TA--CACTGTTCAAGATTACCCTTTGAAGCATTTGCTACTACTTCATCA 176
|||||| ||| || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 238 AGATCTGTTGTTATGCACTGCACAAGATTACCCTTTGAAGCATTTGCTGCTACTTCATCA 297
Query 177 AACCGGCTTCTTGGGAAACATTCATTGCCTTTGAGAGCAGCTTTGGTTACTTCAAACCCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 AACCGGCTTCTTGGGAAACATTCATTGCCTTTGAGAGCAGCTTTGGTTACTTCGAACCCT 357
Query 237 TCAAACATTTCATCTTCCTCTGTTATCAGTGATGCTATTTCATCTGCCTCTGTTATCACT 296
| |||||||||||||||||| |||||| |||||| ||||||||| ||||||||||||||
Sbjct 358 TTAAACATTTCATCTTCCTCAGTTATCTCTGATGCCATTTCATCTTCCTCTGTTATCACT 417
Query 297 GATGATGCCAAAATTGGTGTCTTGTTATTGAACCTTGGAGGTCCTGAGACTTTAGATGAT 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 GATGATGCCAAAATTGGTGTCTTGTTATTAAACCTTGGAGGTCCTGAGACTTTAGATGAT 477
Query 357 GTTCAACCTTTTTTGTTTAACCTCTTCGCCGACCCGGACATTATACGGTTGCCACCGCTA 416
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 478 GTACAACCCTTTTTGTTTAACCTCTTCGCCGACCCGGACATTATACGGTTGCCGCCGGTA 537
Query 417 TTCCAGTTTCTTCAGAAGCCATTAGCACAGTTTATATCAGTAGCAAGGGCTCCCAAAAGC 476
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 538 TTCCAGTTTCTTCAGAAGCCATTAGCACAGTTTATATCAGTAGCAAGAGCACCCAAAAGC 597
Query 477 AAGGAAGGATATGCATCTATTGGTGGTGGTTCTCCTCTTCGCCACATAACTGATGCACAG 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AAGGAAGGATATGCATCTATTGGTGGAGGTTCTCCTCTTCGCCACATAACTGATGCACAG 657
Query 537 GCTGAAGAATTAAGAAAGTCCCTTTGGGAGAAAAATGTCCCAGCAAAGGTATATGTTGGT 596
||||||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||
Sbjct 658 GCTGAAGAATTAAGAAAATGCCTTTGGGAAAAAAATGTACCAGCAAAGGTATATGTTGGT 717
Query 597 ATGCGGTATTGGCATCCGTTCACTGAGGAAGCCATTGAACAGATAAAAAGAGATGGAATT 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGCGGTATTGGCATCCATTCACTGAGGAAGCCATTGAACAGATAAAAAGAGATGGAATT 777
Query 657 ACAAAACTAGTTGTTCTACCACTTTATCCTCAATTTTCGATATCGACTAGTGGTTCAAGC 716
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 778 ACAAAACTAGTTGTTCTACCACTTTATCCTCAATTTTCTATATCAACTAGTGGTTCAAGC 837
Query 717 CTAAGACTCTTGGAGAGAATATTTAGAGAGGACGAGTATCTTGTGAACATGCAGCATACT 776
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 838 CTAAGACTCTTGGAGAGAATATTTCGAGAGGACGAGTATCTTGTTAACATGCAACATACT 897
Query 777 GTTATACCATCTTGGTATCAGCGGGAGGGATATATAAAAGCAATGGCAAATCTAATCCAA 836
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 GTTATACCATCGTGGTATCAGCGGGAGGGATATATAAAGGCAATGGCAAATCTAATCCAA 957
Query 837 AGCGAGTTGGGAAAATTTGGTTCCCCTAGTCAG 869
||||||||||||||||||||||| |||| ||||
Sbjct 958 AGCGAGTTGGGAAAATTTGGTTCTCCTAATCAG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5