BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481952
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30400.1 | Symbols: ATOFP2, OFP2 | ovate family protein 2 | ... 1447 0.0
> AT2G30400.1 | Symbols: ATOFP2, OFP2 | ovate family protein 2
| chr2:12956561-12957554 FORWARD LENGTH=994
Length=994
Score = 1447 bits (783), Expect = 0.0
Identities = 905/962 (94%), Gaps = 16/962 (2%)
Strand=Plus/Plus
Query 1 GATGGGGAATTACAAGTTCAGAATTTCAGAAATGCTCCCAAATGCATGGTTCCACAAGCT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 31 GATGGGGAATTACAAGTTCAGAATTTCAGAGATGCTCCCAAATGCATGGTTCCACAAGCT 90
Query 61 CAAAGACATGACTAAACACTCTAAACCCAAAAACAAATCTTCTTCTTCTTCCTCAAACAC 120
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 91 CAAAGACGTGACTAAACACTCTAAACCCAAAAACAAAGCTTCTTCTTCTTCCTCAAACAC 150
Query 121 TTGTAGCAAGAAGAAACCTTACTCAGATTCTCTTCCTCATCACTCTGATTTCTCCAACAG 180
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 151 TTGTAGCAAGAAGAAACCTTCCTCAGATTCTCTTCCTCAACACTCTTATTTCTCCAACAG 210
Query 181 CTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CTTAGTAGCTAACAATCCTCCTCACCATAACTCACCAAGAAACTCTCTTCACACAAAAAA 270
Query 241 GATGAGTAAGAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCT-C-C- 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 271 GATGAGTAAAAGAAAGACACTTTACAAGCCATCCCTTAAACCTTTGACTCCTCCTCCTCT 330
Query 298 TCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGGTCAGGATTCGTCTTACAGCTT 357
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 331 TCTTGTATCTGCAAGTTTCAACAAGAGCAAGATCAACGATCAAGATTCGTCTTACAGCTT 390
Query 358 GTTCCCAGCTCTTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGAGGA 417
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 391 GTTCCCGGCTATTGAAACCTCCCCTGAGTCTTTTGTGTATAGTTTCTACGAAGAGGATGA 450
Query 418 GGAGGATGAGTTCGTTGACTTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCAC 477
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGATGATGAGTTCGTTGAATTTTCCAACTTCAAGATCAACACAAAGAACAAAGCTTTCAC 510
Query 478 CAAGCACAAGGTCAAAGTGTTTGATTCGAAAGAGAAAGCTTGT-CTTGCAAGTAATCCGA 536
|||||| |||||||||||| |||||||| ||||||||||||| | |||||| || ||||
Sbjct 511 CAAGCAGAAGGTCAAAGTGATTGATTCGGTAGAGAAAGCTTGTAC-TGCAAGCAAGCCGA 569
Query 537 TCAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATTAACagagagaaagaagaagaag 596
| |||||||||||||||||||||||||||||||||||| || |||| | ||||| | |
Sbjct 570 TTAAGAAACCGCAGAAAAGCCATCTTTCTGTGAAAATT-TCA-AGAG-ATGAAGATG-AT 625
Query 597 acgatggtgaatatagagcagagaagaaATACCAAAGGCAAGTTTCTAGTGGAAGAAAAT 656
| | |||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 626 A--A---TGAATATAAAGCCGAGAAGAAGTACCAAAGGCAAGTTTCTAGTGGAAGAAAAC 680
Query 657 CATCTGCTGGGATAAACCTCAAAAGAGTAAATTCACCTAGAATTCAACTCTCAGGTACTC 716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 681 CATCTGCTGGGATAAACCTCAAAAGAGTGAATTCACCTAGAATTCAACTCTCAGGTACTC 740
Query 717 GTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTTGAGAGCTTCGCTGTGA 776
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 741 GTAGAAGCACTTCTAGAAGATCAGAGAGCAAACAAGATGTTCTAGAGAGCTTCGCTGTGA 800
Query 777 TGAAGCGGTCC-TTGGATCCAAAGAAAGATTTTAGGGAATCAATGATTGAGATGATAGAA 835
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 801 TGAAGCGGTCCGTTG-ATCCAAAGAAAGATTTCAGGGAATCAATGATTGAGATGATAGAA 859
Query 836 GAGAACAACATCAGAGCTTCAAAAGACTTGGAGGATCTTCTTGCTTGTTACCTTTCTTTG 895
|||||||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||
Sbjct 860 GAGAACAACATCAGAGCTTCGAAAGACTTGGAAGACCTTCTTGCTTGCTACCTTACTTTG 919
Query 896 AATCCAAAAGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAGCTT 955
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 920 AATCCAAAGGAGTATCATGATCTTATCATCCATGTTTTCGAACAAATCTGGCTTCAACTT 979
Query 956 AC 957
||
Sbjct 980 AC 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5