BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481953

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A (...   736    0.0  


> AT2G30410.1 | Symbols: KIS, TFCA | tubulin folding cofactor A 
(KIESEL) | chr2:12959289-12960810 FORWARD LENGTH=794
Length=794

 Score =  736 bits (398),  Expect = 0.0
 Identities = 463/494 (94%), Gaps = 6/494 (1%)
 Strand=Plus/Plus

Query  1    AATTCAAAATTGAAAGCAAAGGAAGAA-AAGAAATCGAAATCGGATAGTGTATATTGTTG  59
            |||||| ||||||||||||||||| || ||||||||||||||||| | ||||||||||||
Sbjct  48   AATTCAGAATTGAAAGCAAAGGAAAAAGAAGAAATCGAAATCGGAAACTGTATATTGTTG  107

Query  60   TTCTTCGA-T--TCCTCGCTCTGCGCCGCGTTCTCTCTCTCAAATTCATCGGAAGCAACC  116
            |||||||| |  |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  108  TTCTTCGATTCCTCCTCGCTCTACGCCGCGTCCTCTCTCTCAAATTCATCGGAAGCAACC  167

Query  117  TTCTTCTCCGATCTTCGTCTGTATCCAATGGCAACGATTAGGAACTTGAAGATAAAAACA  176
            ||||||||| ||| ||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct  168  TTCTTCTCCCATCATCGCCTGAATCCAATGGCAACGATAAGGAACTTGAAGATAAAAACA  227

Query  177  TCGACATGTAAAAGGATTGAGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAA  236
            || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  228  TCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAA  287

Query  237  GCTGCTAAGACTGCTGCTATGAAGGACAAAGGTGCTGATCCCTACGATCTTAAACAGCAG  296
            || ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct  288  GCGGCTAAGACTGCTGATATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAG  347

Query  297  GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGACTCGAGGCT  356
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  348  GAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCT  407

Query  357  GCATTAGCTGAACTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGT  416
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  408  GCATTGGCTGACCTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGT  467

Query  417  CCAGAGATTGAAGATGCAAAGAAGACAGTTGCGGGCT-TGGAGAAGCAGTTTCACACTGA  475
            |||||||| |||||||||||||||||||| ||||  | ||||||||||||||| ||||||
Sbjct  468  CCAGAGATCGAAGATGCAAAGAAGACAGTCGCGGA-TGTGGAGAAGCAGTTTCCCACTGA  526

Query  476  AGATGCCTGATTTA  489
            ||||||||||||||
Sbjct  527  AGATGCCTGATTTA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33958283372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5