BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481955

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30432.1 | Symbols: TCL1 | Homeodomain-like superfamily prot...   433    8e-121
  AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot...   219    2e-56 


> AT2G30432.1 | Symbols: TCL1 | Homeodomain-like superfamily protein 
| chr2:12968615-12970209 REVERSE LENGTH=552
Length=552

 Score =  433 bits (234),  Expect = 8e-121
 Identities = 267/283 (94%), Gaps = 2/283 (1%)
 Strand=Plus/Plus

Query  101  ATACTAATGGATAACACAAACCGTCTTCGCCGCCTTCAGGGTCGTAAGCAACCCAAGTTC  160
            ||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||||||
Sbjct  144  ATACTAATGGATAACACAAACCGTCTTCGCCGCCTTCACTGTCATAAACAACCCAAGTTC  203

Query  161  ACTCATAACTC-CGAAGAAGTGTGTAGTATGAAATGGGAGTTTATCAATATGACCGAACA  219
            ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  204  ACTCATAGCTCTC-AAGAAGTGAGTAGTATGAAATGGGAGTTTATCAATATGACCGAACA  262

Query  220  AGAAGAAGATCTCATCTTTAGAATGTACAGACTTGTTGGTGACAGGTGGGATTTAATAGC  279
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  263  AGAAGAAGATCTCATCTTTAGAATGTACAGACTTGTTGGCGACAGGTGGGATTTAATAGC  322

Query  280  AAGAAGAGTGGTGGGACGTGAGGCAATGGAGATAGAGAGATATTGGATTATGAGAAACTC  339
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | 
Sbjct  323  AAGAAGAGTGGTGGGACGTGAGGCAAAGGAGATAGAGAGATACTGGATTATGAGAAATTG  382

Query  340  TGAGTCTTTCTCCCACAAATGACGCAAACGTCACTCTCTTTAA  382
            ||| | |||||||||||||||||||||| ||||||||||||||
Sbjct  383  TGACTATTTCTCCCACAAATGACGCAAAAGTCACTCTCTTTAA  425


 Score =  117 bits (63),  Expect = 9e-26
 Identities = 72/76 (95%), Gaps = 1/76 (1%)
 Strand=Plus/Plus

Query  1   AGAGTTGGGGACCTCTCTTTGTGTCTCTACATAGTTTTGTAA-CCTCACATCTTTTTCTT  59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  4   AGAGTTGGGGACCTCTCTTTGTGTCTCTACATAGTTTTGTAAACCTCACATCTCTTTCTT  63

Query  60  CCCTAGCATTCTCCAA  75
           | || |||||||||||
Sbjct  64  CGCTTGCATTCTCCAA  79


> AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein 
| chr2:12960827-12962162 REVERSE LENGTH=696
Length=696

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 172/198 (87%), Gaps = 4/198 (2%)
 Strand=Plus/Plus

Query  168  ACTCCGAAGAAGTGTGTAGTAT-GAAATGGGAGTTTATCAATATGACCGAACAAGAAGAA  226
            |||| ||||||||| |||| || | ||||||||||||||| |||||||||||||||||||
Sbjct  324  ACTCTGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGAACAAGAAGAA  382

Query  227  GATCTCATCTTTAGAATGTACAGACTTGTTGGTGACAGGTGGGATTTAATAGCAAGAAGA  286
            |||||||||| | |||||||||||||||| ||| | |||||||||||||||||| |||||
Sbjct  383  GATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGA  442

Query  287  GTGGTGGGACGTGAGGCAA-TGGAGATAGAGAGATATTGGATTATGAGAAACTCTGAGTC  345
            || || ||| |  |||||| || |||| |||||||| |||||||||||||||||||| | 
Sbjct  443  GTCGTAGGAAGAAAGGCAAATG-AGATTGAGAGATACTGGATTATGAGAAACTCTGACTA  501

Query  346  TTTCTCCCACAAATGACG  363
            ||| || |||||| ||||
Sbjct  502  TTTTTCTCACAAACGACG  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20911383584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5