BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481956
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30440.1 | Symbols: TPP | thylakoid processing peptide | chr... 2209 0.0
AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 625 5e-178
> AT2G30440.1 | Symbols: TPP | thylakoid processing peptide | chr2:12972877-12975497
FORWARD LENGTH=1860
Length=1860
Score = 2209 bits (1196), Expect = 0.0
Identities = 1474/1602 (92%), Gaps = 43/1602 (3%)
Strand=Plus/Plus
Query 1 TTTCCTTTGATTGCAAAACTAATCTCAAACTCAAAGATCTGCCCTTTAGGGATTTTCCAG 60
||||||||||||||| ||||||||||||||| |||||||| | ||||||| | | ||||
Sbjct 39 TTTCCTTTGATTGCACAACTAATCTCAAACTAAAAGATCTTCTCTTTAGGCA-TACCCAG 97
Query 61 ATCTTTCTCTCTCTAAAGTCTCCACCTTTAACTCG--TTTT-CTTCTCACCTGAATCCAA 117
||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||
Sbjct 98 ATCTTTCTCTCTCTAAAGTCTCCACCTTTCAC-GGTTTTTTGCTTCTCACCTGAATCCAA 156
Query 118 TCAATCTCGCCGGAGAGAATTCACCTTCTTCCAATTGACTCGTCGGACATAGTCCGAACT 177
||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| ||
Sbjct 157 TCAATCTCGCCGGAGTGAATTCACCTTCCTCCGGTTGACTCGTCGGACTTAGTCCGACCT 216
Query 178 CTCAATTCGTCGATTCTGTTTTCAATTCACTGATCGATTGATTAGAAATGGGTTACTTGT 237
||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 217 TTCAATTCGTAGATTCTGTTTACAATTCACTGATCGTTTGATTAGAAATGGGTTACTTGT 276
Query 238 TCTTCTGAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACACTTCGATTTACCCTTA 297
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 277 TCTTCTAAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACTCTTCGATTTACCCTTA 336
Query 298 CTTGTTCAAGTTCTTCTTCAAATTCGTATTTATGGCGATTAGAATTACTTTCACTTATTC 357
|||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| ||
Sbjct 337 CTTGTTCAAGTTCTTCATCAAATTCGTAGTTATGGCGATAAGAATCACTTTCACTTACTC 396
Query 358 CACTCATGTTGCTCGGAATCTCGTCGGGATCCGTCCCGGCGGTGATC--TCCGTTGCTGC 415
||| ||||||||||||||||||||||||| |||| | ||| | | ||| ||||
Sbjct 397 CACCCATGTTGCTCGGAATCTCGTCGGGACCCGT---GTTGGT-CCCGGT-GGTTACTGC 451
Query 416 TTTGAGTCCTTGGTTCGTCCTAGATTCTTCACCCACAAGCGTGATTTTGATAAATCTCCT 475
||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct 452 TTTGAATCCTTGGTTCGTCCTAGATTCTTCTCCCACAAGCGTGATTTCGATAGATCTCCT 511
Query 476 CGGAATCGACCTCCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGT 535
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CGGAATCGACCTGCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGT 571
Query 536 CAAAGCCCGCTTGTGATGGGTTTGATCTCGATCTTGAAGTCAACGTCGGCTCATGAATCG 595
|||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||
Sbjct 572 CAAAGCCCGCTTGTGATGGGTTTGATCTCGATATTGAAGTCAACGACGGGTCATGAGTCG 631
Query 596 TCAACGACGATGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTT 655
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TCAACGA---TGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTT 688
Query 656 CTTCAAGGGTCGAAATGGATGAAGAATCCGCCGGA-AGTTGATGACGTGGATAAAGGAGG 714
|||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||
Sbjct 689 CTTCAAGGGTCGAAATGGATTAAGAATCCACCGGTGA-TTGATGACGTGGATAAAGGAGG 747
Query 715 AAC-GTTGTGTGATGATGATGAGGATAAGGAATCGAGGAGTGGAGGAAGTGGATGGGTTA 773
||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 748 AACAGTT-TGTGATGATGATGATGATAAGGAATCGAGGAATGGAGGAAGTGGATGGGTTA 806
Query 774 ATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGCTTTCACGGCGGTTACTGTTT 833
|||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 807 ATAAGCTTTTGAGTGTTTGTTCTGAGGATGCTAAGGCTGCTTTCACGGCGGTTACTGTTT 866
Query 834 CTATCCTTTTCCGATCGGCTCTTGCGGAGCCAAAGTCGATTCCTTCCACGTCTATGTACC 893
|||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 867 CTATCCTTTTTAGATCAGCTCTTGCGGAGCCAAAGTCGATTCCTTCAACGTCTATGTACC 926
Query 894 CTACCTTGGATGTCGGTGACCGCGTTATGGCGGAGAAGGTCTCGTACTTTTTCAGGAAGC 953
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 927 CTACCTTGGACAAGGGTGATCGCGTTATGGCGGAGAAGGTCTCATACTTTTTCAGGAAGC 986
Query 954 CAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCCAATCTTGCTTGAATAT--G-A-T 1009
||||||||||||||||||| |||||||||||||||||||| ||||| |||||| | | |
Sbjct 987 CAGAGGTTTCAGATATAGTAATCTTCAAGGCTCCTCCAATTTTGCTGGAATATCCGGAAT 1046
Query 1010 -T----ACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAGTGAAGGTGACTGGG 1064
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1047 ATGGCTACAGTTCCAATGATGTATTCATAAAAAGGATAGTGGCAAGTGAAGGTGACTGGG 1106
Query 1065 TTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCT 1166
Query 1125 TAGAGCCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCC 1184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TAGAACCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCC 1226
Query 1185 TTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTCCACTTCCAATAGAGA 1244
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1227 TTGGTGATAACCGCAACAAAAGCTTTGACTCTCATAACTGGGGTCCACTTCCAATAGAGA 1286
Query 1245 ACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATAT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 ACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATAT 1346
Query 1305 ACCACGACCAAGCTATCCCAAAGGGACCTGTTGCAGTTTCATGACAAAATAAAGTTGGAT 1364
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1347 ACCACGACCAAGCTATCACAAGGGGACCTGTTGCAGTTTCATGACAAAAGAAAGTTGGAT 1406
Query 1365 GCTTATTAGAATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGCAGACT 1424
|| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1407 TTTTCTTAGGATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGTAGACT 1466
Query 1425 TGGGATTGAAACTCGGAAA--GTTATGATATCTGCGGATACATACTGTATC---G--A-- 1475
||| |||||||||| ||| |||||||||||||| ||||||||||||||| | |
Sbjct 1467 TGGAATTGAAACTCA-AAACCGTTATGATATCTGCAGATACATACTGTATCATCGTTATG 1525
Query 1476 ---C--ATCTGGTTCTTAGCTGATGGTGGGGAAGCCGGAGAAGTTACGTGTACAAAAGGA 1530
| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1526 GATCGCATCTGGTTCTTAGCTGATGGTCGGGAAGCCGGAGATGTTACGTGTACAAAAGGA 1585
Query 1531 ATGGAAGATGCAGAGAAAATAAAAGGATTTACTGTGATTGTT 1572
|||||||||||| |||||| ||| |||||||||||||||||
Sbjct 1586 ATGGAAGATGCAAAGAAAAGGAAACGATTTACTGTGATTGTT 1627
> AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:2108593-2110986 FORWARD LENGTH=1687
Length=1687
Score = 625 bits (338), Expect = 5e-178
Identities = 506/588 (86%), Gaps = 8/588 (1%)
Strand=Plus/Plus
Query 754 TGGAGGAAGTGGATGGGTTAATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGC 813
||| |||| ||||||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct 749 TGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTAAGGCTGC 808
Query 814 TTTCACGGCGGTTACTGTTTCTATCCTTTTCCGATCGGCTCTTG-CGGAGCCAAAGTCGA 872
|||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| |
Sbjct 809 TTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCT-TTGGCCGAGCCAAAGTCTA 867
Query 873 TTCCTTCCACGTCTATG-TACCCTAC-CTTGGATGTCGGTGACCGCGTTATGGCGGAGAA 930
| ||||| || |||||| | || ||| || | |||| ||||| || ||||| || |||||
Sbjct 868 TACCTTCAACATCTATGCTTCC-TACTCTCG-ATGTGGGTGATCGTGTTATAGCCGAGAA 925
Query 931 GGTCTCGTACTTTTTCAGGAAGCCAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCC 990
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 926 GGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTCCTCC 985
Query 991 AATCTTGCTTGAATATGATTACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAG 1050
|| ||| | ||| ||| |||||||| |||||| |||||||| |||||||| || ||
Sbjct 986 TATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTGCTAG 1045
Query 1051 TGAAGGTGACTGGGTTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGA 1110
||||||||||||||||||||| ||||||| |||||||| || ||||||| ||| ||||
Sbjct 1046 CGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTCAAGC 1105
Query 1111 AGAAGATTTTGTCTTAGAGCCAAT-GTCATATGAAATGGAACCAATGTTTGTCCCCAAAG 1169
||| |||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1106 AGAGGATTTTGTCTTAGAGCCAATTGAC-TATGAAATGGAACCAATGTTTGTCCCTGAAG 1164
Query 1170 GTTATGTCTTTGTCCTTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTC 1229
|||||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 1165 GTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGGGTC 1224
Query 1230 CACTTCCAATAGAGAACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAG 1289
||||||||||| |||||||| | || ||||||||||| || || |||||||| |||||||
Sbjct 1225 CACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCAAAG 1284
Query 1290 TATCAGACACCATATACCACGACCAAGCTATCCCAAAGGGACCTGTTG 1337
| ||||||| ||| |||| || |||| || || |||| || ||||||
Sbjct 1285 TGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTG 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5