BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481956 Length=1598 Score E Sequences producing significant alignments: (Bits) Value AT2G30440.1 | Symbols: TPP | thylakoid processing peptide | chr... 2209 0.0 AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 625 5e-178 > AT2G30440.1 | Symbols: TPP | thylakoid processing peptide | chr2:12972877-12975497 FORWARD LENGTH=1860 Length=1860 Score = 2209 bits (1196), Expect = 0.0 Identities = 1474/1602 (92%), Gaps = 43/1602 (3%) Strand=Plus/Plus Query 1 TTTCCTTTGATTGCAAAACTAATCTCAAACTCAAAGATCTGCCCTTTAGGGATTTTCCAG 60 ||||||||||||||| ||||||||||||||| |||||||| | ||||||| | | |||| Sbjct 39 TTTCCTTTGATTGCACAACTAATCTCAAACTAAAAGATCTTCTCTTTAGGCA-TACCCAG 97 Query 61 ATCTTTCTCTCTCTAAAGTCTCCACCTTTAACTCG--TTTT-CTTCTCACCTGAATCCAA 117 ||||||||||||||||||||||||||||| || | |||| |||||||||||||||||| Sbjct 98 ATCTTTCTCTCTCTAAAGTCTCCACCTTTCAC-GGTTTTTTGCTTCTCACCTGAATCCAA 156 Query 118 TCAATCTCGCCGGAGAGAATTCACCTTCTTCCAATTGACTCGTCGGACATAGTCCGAACT 177 ||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| || Sbjct 157 TCAATCTCGCCGGAGTGAATTCACCTTCCTCCGGTTGACTCGTCGGACTTAGTCCGACCT 216 Query 178 CTCAATTCGTCGATTCTGTTTTCAATTCACTGATCGATTGATTAGAAATGGGTTACTTGT 237 ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 217 TTCAATTCGTAGATTCTGTTTACAATTCACTGATCGTTTGATTAGAAATGGGTTACTTGT 276 Query 238 TCTTCTGAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACACTTCGATTTACCCTTA 297 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 277 TCTTCTAAGTCTCTCTTTAGCTGAAAGTTTGTTGCTTTACGACTCTTCGATTTACCCTTA 336 Query 298 CTTGTTCAAGTTCTTCTTCAAATTCGTATTTATGGCGATTAGAATTACTTTCACTTATTC 357 |||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||| || Sbjct 337 CTTGTTCAAGTTCTTCATCAAATTCGTAGTTATGGCGATAAGAATCACTTTCACTTACTC 396 Query 358 CACTCATGTTGCTCGGAATCTCGTCGGGATCCGTCCCGGCGGTGATC--TCCGTTGCTGC 415 ||| ||||||||||||||||||||||||| |||| | ||| | | ||| |||| Sbjct 397 CACCCATGTTGCTCGGAATCTCGTCGGGACCCGT---GTTGGT-CCCGGT-GGTTACTGC 451 Query 416 TTTGAGTCCTTGGTTCGTCCTAGATTCTTCACCCACAAGCGTGATTTTGATAAATCTCCT 475 ||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||||||| Sbjct 452 TTTGAATCCTTGGTTCGTCCTAGATTCTTCTCCCACAAGCGTGATTTCGATAGATCTCCT 511 Query 476 CGGAATCGACCTCCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGT 535 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 CGGAATCGACCTGCATCGATGTATGGTAGCATCGCGAGGGAGCTCATCGGAGAAGGAAGT 571 Query 536 CAAAGCCCGCTTGTGATGGGTTTGATCTCGATCTTGAAGTCAACGTCGGCTCATGAATCG 595 |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| Sbjct 572 CAAAGCCCGCTTGTGATGGGTTTGATCTCGATATTGAAGTCAACGACGGGTCATGAGTCG 631 Query 596 TCAACGACGATGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTT 655 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 TCAACGA---TGAATGTTCTGGGGGTTTCATCTTTCAAGGCTTCTTCTATTATTCCGTTT 688 Query 656 CTTCAAGGGTCGAAATGGATGAAGAATCCGCCGGA-AGTTGATGACGTGGATAAAGGAGG 714 |||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||| Sbjct 689 CTTCAAGGGTCGAAATGGATTAAGAATCCACCGGTGA-TTGATGACGTGGATAAAGGAGG 747 Query 715 AAC-GTTGTGTGATGATGATGAGGATAAGGAATCGAGGAGTGGAGGAAGTGGATGGGTTA 773 ||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 748 AACAGTT-TGTGATGATGATGATGATAAGGAATCGAGGAATGGAGGAAGTGGATGGGTTA 806 Query 774 ATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGCTTTCACGGCGGTTACTGTTT 833 |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 807 ATAAGCTTTTGAGTGTTTGTTCTGAGGATGCTAAGGCTGCTTTCACGGCGGTTACTGTTT 866 Query 834 CTATCCTTTTCCGATCGGCTCTTGCGGAGCCAAAGTCGATTCCTTCCACGTCTATGTACC 893 |||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 867 CTATCCTTTTTAGATCAGCTCTTGCGGAGCCAAAGTCGATTCCTTCAACGTCTATGTACC 926 Query 894 CTACCTTGGATGTCGGTGACCGCGTTATGGCGGAGAAGGTCTCGTACTTTTTCAGGAAGC 953 |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 927 CTACCTTGGACAAGGGTGATCGCGTTATGGCGGAGAAGGTCTCATACTTTTTCAGGAAGC 986 Query 954 CAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCCAATCTTGCTTGAATAT--G-A-T 1009 ||||||||||||||||||| |||||||||||||||||||| ||||| |||||| | | | Sbjct 987 CAGAGGTTTCAGATATAGTAATCTTCAAGGCTCCTCCAATTTTGCTGGAATATCCGGAAT 1046 Query 1010 -T----ACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAGTGAAGGTGACTGGG 1064 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1047 ATGGCTACAGTTCCAATGATGTATTCATAAAAAGGATAGTGGCAAGTGAAGGTGACTGGG 1106 Query 1065 TTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 TTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGAAGAAGATTTTGTCT 1166 Query 1125 TAGAGCCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCC 1184 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1167 TAGAACCAATGTCATATGAAATGGAACCAATGTTTGTCCCCAAAGGTTATGTCTTTGTCC 1226 Query 1185 TTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTCCACTTCCAATAGAGA 1244 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1227 TTGGTGATAACCGCAACAAAAGCTTTGACTCTCATAACTGGGGTCCACTTCCAATAGAGA 1286 Query 1245 ACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATAT 1304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 ACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAGTATCAGACACCATAT 1346 Query 1305 ACCACGACCAAGCTATCCCAAAGGGACCTGTTGCAGTTTCATGACAAAATAAAGTTGGAT 1364 ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 1347 ACCACGACCAAGCTATCACAAGGGGACCTGTTGCAGTTTCATGACAAAAGAAAGTTGGAT 1406 Query 1365 GCTTATTAGAATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGCAGACT 1424 || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1407 TTTTCTTAGGATTAAAGCACAAGATTGTGCAAAACCAGTCTGGTCAGAATTGGGTAGACT 1466 Query 1425 TGGGATTGAAACTCGGAAA--GTTATGATATCTGCGGATACATACTGTATC---G--A-- 1475 ||| |||||||||| ||| |||||||||||||| ||||||||||||||| | | Sbjct 1467 TGGAATTGAAACTCA-AAACCGTTATGATATCTGCAGATACATACTGTATCATCGTTATG 1525 Query 1476 ---C--ATCTGGTTCTTAGCTGATGGTGGGGAAGCCGGAGAAGTTACGTGTACAAAAGGA 1530 | ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1526 GATCGCATCTGGTTCTTAGCTGATGGTCGGGAAGCCGGAGATGTTACGTGTACAAAAGGA 1585 Query 1531 ATGGAAGATGCAGAGAAAATAAAAGGATTTACTGTGATTGTT 1572 |||||||||||| |||||| ||| ||||||||||||||||| Sbjct 1586 ATGGAAGATGCAAAGAAAAGGAAACGATTTACTGTGATTGTT 1627 > AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:2108593-2110986 FORWARD LENGTH=1687 Length=1687 Score = 625 bits (338), Expect = 5e-178 Identities = 506/588 (86%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 754 TGGAGGAAGTGGATGGGTTAATAAGCTTTTGAATATTTGTTCTGAGGATGCAAAGGCTGC 813 ||| |||| ||||||||||||||||| |||||||| || || |||||||| |||||||| Sbjct 749 TGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGCTAAGGCTGC 808 Query 814 TTTCACGGCGGTTACTGTTTCTATCCTTTTCCGATCGGCTCTTG-CGGAGCCAAAGTCGA 872 |||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||| | Sbjct 809 TTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCT-TTGGCCGAGCCAAAGTCTA 867 Query 873 TTCCTTCCACGTCTATG-TACCCTAC-CTTGGATGTCGGTGACCGCGTTATGGCGGAGAA 930 | ||||| || |||||| | || ||| || | |||| ||||| || ||||| || ||||| Sbjct 868 TACCTTCAACATCTATGCTTCC-TACTCTCG-ATGTGGGTGATCGTGTTATAGCCGAGAA 925 Query 931 GGTCTCGTACTTTTTCAGGAAGCCAGAGGTTTCAGATATAGTGATCTTCAAGGCTCCTCC 990 |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 926 GGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGCTCCTCC 985 Query 991 AATCTTGCTTGAATATGATTACAGTTCCAATGATGTATTCATAAAGAGGATAGTGGCAAG 1050 || ||| | ||| ||| |||||||| |||||| |||||||| |||||||| || || Sbjct 986 TATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGTTGCTAG 1045 Query 1051 TGAAGGTGACTGGGTTGAAGTTCGTGATGGGAAGCTCTTTGTGAATGACATTGTGCAAGA 1110 ||||||||||||||||||||| ||||||| |||||||| || ||||||| ||| |||| Sbjct 1046 CGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGTTCAAGC 1105 Query 1111 AGAAGATTTTGTCTTAGAGCCAAT-GTCATATGAAATGGAACCAATGTTTGTCCCCAAAG 1169 ||| |||||||||||||||||||| | | |||||||||||||||||||||||||| ||| Sbjct 1106 AGAGGATTTTGTCTTAGAGCCAATTGAC-TATGAAATGGAACCAATGTTTGTCCCTGAAG 1164 Query 1170 GTTATGTCTTTGTCCTTGGTGACAACCGCAACAAAAGCTTCGACTCTCATAACTGGGGTC 1229 |||||||||| ||||| || |||||||||||||||||||| || |||||||||||||||| Sbjct 1165 GTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTGGGGTC 1224 Query 1230 CACTTCCAATAGAGAACATCGTTGGAAGATCTGTGTTCCGGTACTGGCCACCGAGCAAAG 1289 ||||||||||| |||||||| | || ||||||||||| || || |||||||| ||||||| Sbjct 1225 CACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAGCAAAG 1284 Query 1290 TATCAGACACCATATACCACGACCAAGCTATCCCAAAGGGACCTGTTG 1337 | ||||||| ||| |||| || |||| || || |||| || |||||| Sbjct 1285 TGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTG 1332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78915256740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5