BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481961
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30490.1 | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-... 2615 0.0
> AT2G30490.1 | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase
| chr2:12993663-12995770 REVERSE LENGTH=1803
Length=1803
Score = 2615 bits (1416), Expect = 0.0
Identities = 1680/1805 (93%), Gaps = 28/1805 (2%)
Strand=Plus/Plus
Query 1 TCAGCAGCTTCTTCTGCTTTCAA-T-CACTCGCCGACGATTTTCTCACCGG--AAAAATT 56
||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 2 TCAGCAGCTTCTTCTGCTTTCAATTACTCTCGCCGACGATTTTCTCACCGGAAAAAAACA 61
Query 57 A-ATCATTGCGGATACACAAACTATAATGGACCTTCTCTTGTTGGAGAAGTCTTTAATCG 115
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 62 ATATCATTGCGGATACACAAACTATAATGGACCTCCTCTTGCTGGAGAAGTCTTTAATCG 121
Query 116 CCGTCTTCGTGGCGGTGGTTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 175
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCGTCTTCGTGGCGGTGATTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 181
Query 176 AGCTACCTCCAGGTCCTATGCCGATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 235
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 182 AGCTACCTCCAGGTCCTATACCAATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 241
Query 236 ATCTTAACCACCGTAATCTCATCGATTACGCTAAAAAATTTGGCGATCTCTTCCTCCTCA 295
|||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 242 ATCTCAACCACCGTAATCTCGTCGATTACGCTAAGAAATTCGGCGATCTCTTCCTCCTCC 301
Query 296 GGATGGGTCAGCGAAACCTAGTCGTCGTCTCTTCACCGGATCTGACTAAA-GAAGTACTC 354
| ||||||||||||||||||||||||||||| ||||||||||| || ||| ||||| |||
Sbjct 302 GTATGGGTCAGCGAAACCTAGTCGTCGTCTCCTCACCGGATCTAAC-AAAGGAAGTGCTC 360
Query 355 CACACACAAGGTGTTGAGTTTGGATCTAGAACGAGAAACATCGTGTTCGACATTTTCACC 414
| ||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 361 CTCACTCAAGGCGTTGAGTTTGGATCCAGAACGAGAAACGTCGTGTTCGACATTTTCACC 420
Query 415 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGAGAGCATTGGAGGAAGATGAGAAGG 474
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGCGAGCATTGGAGGAAGATGAGAAGA 480
Query 475 ATCATGACGGTTCCGTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAA 534
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCATGACGGTTCCTTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAG 540
Query 535 TTCGAAGCAGCGAGTGTTGTTGAAGATGTGAAGAAGAATCCAGATTCTGCTACTAAAGGA 594
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 541 TTTGAAGCAGCTAGTGTTGTTGAAGATGTTAAGAAGAATCCAGATTCTGCTACGAAAGGA 600
Query 595 ATTGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 660
Query 655 GATAGAAGATTTGAGAGTGAAGATGATCCTCTTTTTCTTAGGCTTAAGGCTTTGAATGGT 714
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GATAGAAGATTTGAGAGTGAGGATGATCCTCTTTTCCTTAGGCTTAAGGCTTTGAATGGT 720
Query 715 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTACAACTATGGAGATTTCATCCCTATCCTT 774
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 721 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTATAACTATGGAGATTTCATTCCTATCCTT 780
Query 775 AGACCATTCCTTAGAGGTTATTTGAAGATTTGCCAAGATGTGAAGGATCGAAGAATTGCT 834
||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 781 AGACCATTCCTCAGAGGCTATTTGAAGATTTGTCAAGATGTGAAAGATCGAAGAATCGCT 840
Query 835 CTATTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 894
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTTTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 900
Query 895 AGTGAAGGATTGAAATGTGCCATTGATCATATCCTTGAAGCTGAACAGAAGGGAGAAATC 954
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 901 AGTGAAGGATTGAAATGTGCCATTGATCACATCCTTGAAGCTGAGCAGAAGGGAGAAATC 960
Query 955 AATGAGGACAACGTTCTTTACATCGTCGAGAACATCAACGTTGCTGCGATTGAGACAACA 1014
|| |||||||| |||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 961 AACGAGGACAATGTTCTTTACATCGTCGAGAACATCAATGTCGCCGCGATTGAGACAACA 1020
Query 1015 TTGTGGTCAATCGAATGGGGAATTGCGGAGCTGGTGAACCATCCTGAAATCCAGAGTAAG 1074
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1021 TTGTGGTCTATCGAGTGGGGAATTGCAGAGCTAGTGAACCATCCTGAAATCCAGAGTAAG 1080
Query 1075 CTAAGGAATGAAATCGACACGGTTCTTGGACCGGGTGTGCAAGTGACTGAGCCTGAGCTT 1134
|||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||| |||
Sbjct 1081 CTAAGGAACGAACTCGACACAGTTCTTGGACCGGGTGTGCAAGTCACCGAGCCTGATCTT 1140
Query 1135 CACAAGCTTCCATACCTTCAAGCAGTGATCAAGGAGACACTTCGTCTAAGAATGGCGATT 1194
||||| ||||||||||||||||| ||| | |||||||| |||||||| ||||||||||||
Sbjct 1141 CACAAACTTCCATACCTTCAAGCTGTGGTTAAGGAGACTCTTCGTCTGAGAATGGCGATT 1200
Query 1195 CCTCTCCTCGTGCCTCACATGAACCTCCACGACGCCAAGCTCGCTGGCTACGATATCCCA 1254
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 1201 CCTCTCCTCGTGCCTCACATGAACCTCCATGATGCGAAGCTCGCTGGCTACGATATCCCA 1260
Query 1255 GCAGAAAGCAAAATCCTTGTCAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1314
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCAGAAAGCAAAATCCTTGTTAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1320
Query 1315 AAACCTGAAGAGTTTAGACCAGAGAGGTTCTTGGAAGAAGAAGCGCACGTGGAAGCGAAT 1374
|| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1321 AAGCCTGAAGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAATCGCACGTGGAAGCTAAC 1380
Query 1375 GGTAATGACTTCAGGTTTGTGCCGTTTGGTGTTGGACGTAGAAGCTGTCCCGGGATTATA 1434
|||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1381 GGTAATGACTTCAGGTATGTGCCATTTGGTGTTGGACGTCGAAGCTGTCCCGGGATTATA 1440
Query 1435 TTGGCATTGCCCATTTTGGGAATCACCATTGGAAGGATGGTCCAAAACTTCGAGCTGCTT 1494
||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1441 TTGGCATTGCCTATTTTGGGGATCACCATTGGTAGGATGGTCCAGAACTTCGAGCTTCTT 1500
Query 1495 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1560
Query 1555 ATCCTTAACCACTCCACAATCGTTATGAAACCAAGGAACTTTTAAATTTTCTGCA-AAAA 1613
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1561 ATCCTTAACCACTCCATAATCGTTATGAAACCAAGGAACTGTTAAACTTTCTGCACAAAA 1620
Query 1614 A------TGACTTT-A-TATAATGA-TGTTTGTGAAATCTGTTGAA-TATTCCCATGTTT 1663
| ||| | | | || | | |||||||||||||||||||| ||||||| |||||
Sbjct 1621 AAAAGGATGAAGATGACTTTA-TAAATGTTTGTGAAATCTGTTGAAATATTCCCTTGTTT 1679
Query 1664 TGCTTTTGTGAGATGTTTT-GTGTAAAATGTCTTTAAATGGCTCGTTCTATCGATTGCAA 1722
||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||
Sbjct 1680 TGCTTTTGTGAGATGTTTTTGTGTAAAATGTCTTTAAATGGTTCGTTCTA-CGATTGCAA 1738
Query 1723 TAAT--T-AGTGGTGCCCATTGTTTTGAATGGA-CATTG--ATG-TTCTATCATTTCAAA 1775
|||| | |||||||| |||||||||| ||||| || || || || |||||||| |||
Sbjct 1739 TAATAATTAGTGGTGCTCATTGTTTTGGATGGATCAATGTTATACTTATATCATTTGAAA 1798
Query 1776 ATCTC 1780
|||||
Sbjct 1799 ATCTC 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88051755930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5