BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481962
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30500.1 | Symbols: | Kinase interacting (KIP1-like) family... 2338 0.0
> AT2G30500.1 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr2:12998159-13000102 REVERSE LENGTH=1754
Length=1754
Score = 2338 bits (1266), Expect = 0.0
Identities = 1487/1595 (93%), Gaps = 10/1595 (1%)
Strand=Plus/Plus
Query 1 TTTCTCTGCACTCCACGGTCATGGCCTCATCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 60
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 11 TTTCTCTGCACTCCACGGTCATGGCTTCGTCTACGGCTCAGAGCAAGAAGCAGTTTAAGA 70
Query 61 GGTCTATGACCAAGAAATCACACTCATGGTGGTGGGATAGTCACAATTCTCCCAAGAACT 120
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 71 GGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACT 130
Query 121 CAAAATGGCTCGCAGAGAATCTAGAGAAGATGGATGATCGAGTGAACCACATGTTGAAAC 180
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 131 CAAAATGGCTTGCAGAGAATCTAGAAAAGATGGATGATCGAGTGAACCACATGTTAAAAC 190
Query 181 TGATTGAAGAAGACGCAGACTCTTTTGCCAAGAAAGCTCAGATGTATTTCCAGAAGCGTC 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 191 TGATTGAAGAAGACGCAGACTCTTTTGCAAAGAAAGCTCAGATGTATTTTCAGAAACGTC 250
Query 241 CAGAGTTAATCCAACTTGTTGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 300
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CCGAGTTAATCCAGCTTGTCGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTT 310
Query 301 ATGATCAAGCTAGTGGTGAACTTCAGAAGAATCATACATCTGAGATCCAGTCACAGAGCT 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 311 ATGATCAAGCTAGTGGTGAACTTCAGAAGAACCATACATCTGAGATCCAGTCACAGAGCT 370
Query 361 CTCTTGAGTTATCATCTCCTACCAAAGAGAAGTTGAGTCGTCGTCAATCTGGCAATAAAG 420
|||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 371 CTCTTGAGATATCATCTCCTACCAAAGAGAAGTTGAGTCGCCGTCAATCTAGCCATAAAG 430
Query 421 AAGAGGAAGATTCATCATCTTTGACTGATTCCGGTTCTGATTCTGATCATTCCTCTGCCA 480
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 431 AAGAGGAAGATTCATCGTCTTTGACAGATTCTGGTTCTGATTCTGATCATTCCTCTGCCA 490
Query 481 ATGATGAAGACGCTGACGAGGCACTGATCCGAAGGATGGCTGAT-TTAGAGCTTGAGCTT 539
|||||||||||| |||||||||| ||||||| || |||||||| || ||||||||||||
Sbjct 491 ATGATGAAGACGGTGACGAGGCATTGATCCGTAGAATGGCTGAACTT-GAGCTTGAGCTT 549
Query 540 CAAGAGACAAAACAAAAGCTCCTTCTCCAGCAGGAAAGTGTTAATGGTGATAATAATGTT 599
|||||||| ||||| ||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 550 CAAGAGACGAAACAGAAGCTCCTTCTCCAGCAGGAAAGTGTTGATGGTGACAACAATGTT 609
Query 600 GATCTCCTTCAGAAAATTGCTGTTTATGAGGGAGAGCTTAAAGAGGCTAATGAGAAGATG 659
||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 610 GATCTCCTTCACAAAATTACTACATATGAGGGAGAGCTTAAAGAAGCTAATGAGAAGATG 669
Query 660 CGAATGCACGAAGAAGAGATCGCTAATCTGAAGGTTCAGCTTCAGAACTTCATGTCCTTT 719
|||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| |||
Sbjct 670 CGAATGCACGAAGACGAGATTGCTAATCTGAAGAATCAGCTTCAGAGCTTCATGTCTTTT 729
Query 720 GACACAGAAGCTCATCTTGGTGCTGAAGAAAAGAGTCCTGATTTGGATAAAGAGGACACT 779
|||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 730 GACACAGAGGATCATCTTGGTGCTGAACAAAAGAGTGTTGATTTGGATAAAGAGGACACT 789
Query 780 AAAGAAGATGCAGCAGCTACAAAATTGCTAGCCTTGGAGGAAGAGCTCAGTAACGCGAAA 839
||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct 790 AAAGAAGATGCAGTAGCTACAAAAGTGCTAGCCTTGGAGGAAGAGCTGAGTATCGCGAAA 849
Query 840 GAGAAGCTTCAACACTTTGAGAAAGAGACTTATTCACT-AAAAATTGAGCTAGA-ACACG 897
||||||||||| ||||||||||||||||||||||| || |||||| ||||| || | ||
Sbjct 850 GAGAAGCTTCAGCACTTTGAGAAAGAGACTTATTCTCTGAAAAAT-GAGCTCGAGAT-CG 907
Query 898 GTAAAGCTGCTGAGGAGAAGCTGAAGAGCTTACAGCATGAGCTTGAGTTGGCTCAGAAAG 957
| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||
Sbjct 908 GCAAAGCCGCTGAGGAGAAGCTGAAGAGCTTACAACATGAGCTCGAGTTGGCTCAGAGAG 967
Query 958 ACACTGATACCTACTTAAACAGGCTCAATGTAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1017
|| ||||||||||| |||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 968 ACGCTGATACCTACATAAACAAGCTCAACGCAGAGAAGAAAGAAGTCTTGAAGTTGCAGG 1027
Query 1018 AGAGATTAGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATACGGGCATTGA 1077
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1028 AGAGATTGGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATAAGGGCATTGA 1087
Query 1078 AAACTGCGGTTTCTGATGCTGAACAAAAGATATTTCCCGAGAAAGCACAGATCATGGGAG 1137
||||||||||||| || |||||||| |||||||| ||||| ||||||||||||| |||||
Sbjct 1088 AAACTGCGGTTTCAGACGCTGAACAGAAGATATTCCCCGAAAAAGCACAGATCAAGGGAG 1147
Query 1138 AAATGTCGAAGATGCTCGAAGAAAGAAGCCAACTTGGGGAGCAACTGAGAGAGCTGGAAT 1197
|||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1148 AAATGTCGAAGATGCTTGAAGAACGAAGCCAACTTGGAGAGCAACTGAGAGAGCTGGAAT 1207
Query 1198 CACATATAAGGCTGATCACGGAAGAGAAAGCTGAAACAGAGGAGAAACTTAGAGGAG-AA 1256
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1208 CACATATAAGGCTGATCAAGGAAGAGAAAGCTGAAACAGAGGAGAAGCTTAGAGGAGGAA 1267
Query 1257 GCCGAGAAAATCAGCGTAATgagagatgagagcaatatgctaagagaagagattaggaag 1316
| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 1268 -CTGAGAAAATCAGCGGAATGAGAGACGAGAGCAATGTGCTAAGAGAAGAGATTGGGAAG 1326
Query 1317 agagaagagaagGTAAAGGAAATGGAAAAGCATATGGAGGAGCTTCACATGGATCAAGTG 1376
|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1327 AGAGAAGAGAAGATAAAGGAAACGGAAAAGCATATGGAGGAGCTTCACATGGAGCAAGTG 1386
Query 1377 AGGCTGAGAAGACGGTCGAGTGAGCTTACAGAAGAAGTGGAAAGGACGAGAGTATCTGCA 1436
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1387 AGGCTGAGAAGACGGTCAAGTGAGCTTACGGAAGAAGTGGAAAGGACGAGAGTGTCTGCA 1446
Query 1437 TCAGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGGCAGCTTTGTATGTCTCTTGAGCAT 1496
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1447 TCGGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGACAGCTTTGTATGTCTCTTGACCAT 1506
Query 1497 TACAGAGATGGATACGACAGGCTTTGGAGAGTTGTTGCAGGACATAA-AGGTAAGAGAGT 1555
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1507 TACAGAGATGGGTACGACAGACTTTGGAGAGTTGTTGCAGGACATAAGAG-TAAGAGAGT 1565
Query 1556 AGTGGTCTTAGCAACGTGAAGTGTAAGAACAATGA 1590
|||||||||| |||| |||||||||||||||||||
Sbjct 1566 AGTGGTCTTATCAACTTGAAGTGTAAGAACAATGA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5