BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481963
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30505.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 2004 0.0
> AT2G30505.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:13000973-13002563
REVERSE LENGTH=1591
Length=1591
Score = 2004 bits (1085), Expect = 0.0
Identities = 1388/1523 (91%), Gaps = 65/1523 (4%)
Strand=Plus/Plus
Query 18 GAAAGTGAAGATTATGGCTCACGGTTAGTCAAAGTTTCAACTTTTATTTTGGGGATTTTC 77
|||| |||| ||||||||| ||||||||||||| |||||| |||||| |||||||| |||
Sbjct 79 GAAATTGAAAATTATGGCTTACGGTTAGTCAAATTTTCAATTTTTATGTTGGGGATATTC 138
Query 78 AATGAGTAAAGATAGATTCATAAAGG-CATAGTC-TTTTGGGATCTAATGGAATTCAAAG 135
||||||||||||||||||||||||| | ||||| ||||||||||| || ||||||||||
Sbjct 139 -ATGAGTAAAGATAGATTCATAAAGGTC-TAGTCTTTTTGGGATCTGATAGAATTCAAAG 196
Query 136 TGTTTAGTCGTTTGGTAGAGTAGT-T--G---A---GG-CAA----AT-T--GCTTGTTA 178
|| |||||||||||||| |||| | | | || || || | ||||||||
Sbjct 197 TGAGAAGTCGTTTGGTAGACTAGTGTAGGCAAATTCGGTGAATGTGATATAAGCTTGTTA 256
Query 179 CAGAAAAAACT-GGAGA-TTGCTATATTTAG-ACGA-TTG-AA---A------T-T-TGA 222
||| ||||| | ||| | ||||||||||||| || | ||| || | | | |||
Sbjct 257 CAGGAAAAA-TGGGA-ACTTGCTATATTTAGAAC-ATTTGAAATTTAGGTTTTTGTATGA 313
Query 223 CATAGGAGCCAACAATAGATTAACGAATGATATCTGTTGGAAAGAGCCAGCCTTGATCTA 282
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 314 CATAGGATCCAACAATAGATTAACGAATGATAACTGTTGGAAAGAGCCAGCCTTGATCTA 373
Query 283 TCGTTAAGAGAATTATGACCCTTGAACTTATCTTCCAACCAGCTT-CTTGTGATTTGAGA 341
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 374 TTGTTAAGAGAATTATGACCCTTGAACTTATCTTCCAACCAGCTTCCTTGTGATTTGAGA 433
Query 342 GAGAAAACAAATCTGATTTTCATGAAATCCAAAACAGAGCTCCAATGTCGGAGCTG---- 397
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GAGAAACCAAATCTGATTTTCATGAAATCCAAAACAGAGCTCCAATGTCGGAGCTGCTTC 493
Query 398 ------CT--tcctcctcctcctcctcct-c-cC-CCTGGGAGGGATTCCGGATTTGGAG 446
|| ||||||||||||||||||| | || ||| |||||||||| ||||||||||
Sbjct 494 CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTAGGAGGGATTCAGGATTTGGAG 553
Query 447 ATCCTGCATTGGTTTTTCCTGAGTTTGCTGCGAAACAATGC-GTCCTCGAAAAAGTTATA 505
||||||||||||| || |||||||||||||| ||||||||| || |||||||||||||||
Sbjct 554 ATCCTGCATTGGTATTCCCTGAGTTTGCTGCCAAACAATGCGGT-CTCGAAAAAGTTATA 612
Query 506 GAGGAAGAAGGAGAAGGGGAAGATAGTAGCTATGGCAAAGGTTCTTTTGATCTGAGTTCG 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GAGGAAGAAGGAGAAGGGGAAGATAGTAGCTATGGCAAAGGTTCTTTTGATCTGAGTTCA 672
Query 566 AGATTCTCAAGCCCTTCTGTATCTCGAAAC-GGATTTGATGATGTTGAAAACCCGGGAAA 624
||||||||||||||||| | ||||||||| || ||||||||||||||||||||| |||
Sbjct 673 AGATTCTCAAGCCCTTCCATTTCTCGAAACAGG-TTTGATGATGTTGAAAACCCGAAAAA 731
Query 625 GGCTTCGTCTTTCAAGCGGCCTCTTTCCGGGTCGAGACTGTCTGGCTTTCGAGAGGAAGA 684
|||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 732 GGCTTCGTCTTTTAAGCGGCCTCCTTCTGCGTCGAGACTGTCTGGCTTTCGAGAGGAAGA 791
Query 685 AGAGGCCGATCGGAGTAGAAAATCGGGTTCTTTTGTGGATCATATCGGTCAGGAGGACAA 744
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 792 AGAGGCCGATCGGAGTAGAAAATCGGGTTCCTTTGTGGATCATATCGGTCAGGAGGACAA 851
Query 745 GAGAATATGTGCCTCTGGGTGCTTCAGGAAATGCTGCGCGTGTACCTGCATGTTTGTTTC 804
||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 852 GAGAATATGCGCCTCTGGATGTTTCAGAAAATGCTGCGCTTGCACCTGCATGTTTGTTTC 911
Query 805 CATTGTCCTTATAATCGTCTTGTTGGTAGGATTGTCTGCAAACTCTTCAATCAAATCTAT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGTTGTCCTTATAATCGTCTTGTTGGTAGGATTGTCTGCAAACTCTTCAATCAAATCTAT 971
Query 865 ACTACCTCAGGTGCTTGTCACAAACCTCAAGTTCTCGAGATTGGATGTCGCCAAATCATC 924
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 972 ACTACCTCAGGTGCTTGTCACAAACCTCAAGTTCTCGAGATTGGATATCGCCAAATCATC 1031
Query 925 GACAGATCTTCTGATGAATGCGAACTTGAACACGGTGCTTCAGCTCTCTAATAACAACGA 984
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1032 GACAGATCTTCTGATGAATGCGAACTTGAACACGGTGCTTCAGCTCTCTAATAATAATGA 1091
Query 985 CAAGACGGTGCTATATTACAGCCCCATGAAAGCTGATATATCTTCTGAGAACATAAACCT 1044
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1092 CAAGACGGTGCTATATTACAGTCCTATGAAAGCTGATATATCTTCTGAGAACATAAACCT 1151
Query 1045 CGGAAAGAAAATGCTTCCTGGATTCAAGCAGGACCCGGGAAACGTTACTTCTTTGAAGAT 1104
||||||||| | ||| ||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1152 CGGAAAGAAGACACTTTCTGGATTCAAGCAGGACCCGGGAAATGTTACCTCCTTGAAGAT 1211
Query 1105 CCTCACAAGACTCAGAAAATCCAAAGTCTACGATGTTGATGCTACATTGCTGACAAACAA 1164
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1212 CCTCACAAGACTCAGAAAATCCAAAGTGTATGATGTTGATGCTACATTGCTGACAAACAA 1271
Query 1165 AGAGAAGACGCTTGAAGCTGTGGTTGATGTGTTCTTGAGAGGGAAACTAAGTGTTGATTG 1224
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1272 AGAGAAGACGCTTGAAGCTTTGGTTGATGTGTTCTTGAGAGGGAAACTGAGTGTTGATTG 1331
Query 1225 GTTGGGATTTAAGGTTCATATACCAATTGTTATTGCGTGCGAGAATGTGAAGCAGAGTGA 1284
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1332 GTTGGGATTTAAGGTTCATATACCAATTGTTATTGCGTGCGAGAGTGTGAAGCAGAGTGA 1391
Query 1285 TGTGATAAATGGACTCAAACCAGCGTGCGATGTTCGAACCTTTTCCCAATGAAAACAGTG 1344
|||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1392 TGTGATAAATGGTCTCAAACCAGCGTGCGATGTTCGAATCTTTTCCGAATGAAAACAATG 1451
Query 1345 AGAGCTATTGATGATACACAAAACACCCTCTGAtctttgttttgttctgttcttttttgt 1404
|||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1452 AGAGCTATTGAT-A--CACAAAG-ACCCTCTGATCTTTGTTTTGTTCTGTTCCTTTTTGT 1507
Query 1405 tgttgctaattttcttgttgtAGATTGATGAATACATAGAAAGAGAGAAGTGTCTTAACT 1464
|||||||||||| || |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1508 TGTTGCTAATTTACTCGTTGTAGATTGATGAATACATAGAAAGAGAGAAGTGACTCAACT 1567
Query 1465 TTTGTTTCTCTAAACTTAACATC 1487
|| ||||||||||||||||||||
Sbjct 1568 TT-GTTTCTCTAAACTTAACATC 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5