BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481966
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30520.1 | Symbols: RPT2 | Phototropic-responsive NPH3 famil... 2924 0.0
> AT2G30520.1 | Symbols: RPT2 | Phototropic-responsive NPH3 family
protein | chr2:13002742-13005600 REVERSE LENGTH=1987
Length=1987
Score = 2924 bits (1583), Expect = 0.0
Identities = 1831/1951 (94%), Gaps = 16/1951 (1%)
Strand=Plus/Plus
Query 1 ATCTCCTTCAATACATAACCaaaaaaaaTGGCGACAGAAGGAAAAAACCCCATCAACATG 60
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATCTCCTTCAATAGAGAACCAAAAAAAATGGCAACAGAAGGAAAAAACCCCATCAACATG 60
Query 61 AACACTATGTCTTCGAGTCTTGCAAGAACCGGTCAATGGGTTTTTTCTCAAGATATTCCG 120
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACTCTATGTCTTCAAGTCTTGCAAGAACCGGTCAATGGGTTTTTTCTCAAGATATTCCG 120
Query 121 ACGGATGTTATAGTTGAAGTCGGAGAAGCCAATTTCTCTCTTCATAAGTTCATGTTAGTG 180
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCGATGTTGTTGTTGAAGTCGGAGAAGCCAATTTCTCTCTTCATAAGTTCATGTTAGTG 180
Query 181 GCGAAGAGCAACTACATAAGGAAGCTAATAATGGAATCCAAAGACAGCGACGTGACGAGA 240
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 GCTAAGAGTAACTACATAAGGAAGCTAATAATGGAATCCAAAGATAGCGACGTGACAAGA 240
Query 241 ATCGATCTCTCAGATATCCCCGGAGGTCCTGAGATATTTGAGAAAGCTGCCAAGTTCTGT 300
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCAATCTCTCGGATATACCCGGAGGTCCTGAGATATTTGAGAAAGCTGCCAAGTTCTGT 300
Query 301 TACGGTGTTAACTTCGAGATCACCGTTCAGAACGTGGCGGCTCTTCATTGCGCCGCAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 TACGGTGTTAACTTCGAGATCACCGTTCAGAACGTGGCGGCTCTTCATTGCGCAGCCGAG 360
Query 361 TTTCTTCAGATGACCGACAAGTACTGCGACAACAACCTTGCTGGTCGGACACAAGACTTC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCTTCAGATGACCGATAAGTACTGCGACAACAACCTTGCTGGTCGGACACAAGACTTC 420
Query 421 CTTTCACAGGTGGCTCTCTCTAGCCTCTCTGGAGCCATTGTCGTCCTCAAGTCTTGCGAG 480
||||| || || ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 421 CTTTCTCAAGTAGCTCTCTCTAGCCTCTCTGGAGCTATCGTTGTCCTCAAGTCTTGCGAG 480
Query 481 ATTCTCCTTCCTATTTCTCGTGATCTTGG-ACTTGTACGCCGTTGCGTCGATGTCGTTGG 539
||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||| ||
Sbjct 481 ATTCTCCTTCCTATTTCTCGTGATCTTGGTA-TTGTCCGCCGTTGTGTCGACGTCGTCGG 539
Query 540 TGCTAAGGCTTGCAACGAGGCAATGTTTCCATGTCGAACACCACCAAACTGGTGGACAGA 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TGCTAAGGCTTGCAACGAGGCAATGTTTCCATGTCGAACACCACCAAATTGGTGGACAGA 599
Query 600 GGAGCTTTGTATCTTAGACGTCGACTTCTTCGCCGACGTTGTATCTTCCATGAAGCAGAG 659
||| || |||||||||||||||||||||||| |||| || |||||||| |||||||||||
Sbjct 600 GGAACTCTGTATCTTAGACGTCGACTTCTTCTCCGATGTCGTATCTTCAATGAAGCAGAG 659
Query 660 AGGAGTCAAACCTTCTTCCTTAGCCTCTGCAATCATCACCTACACTGAGAAATCCTTAAG 719
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 AGGTGTCAAACCTTCTTCCTTAGCCTCTGCAATCATCACCTACACAGAGAAATCCTTAAG 719
Query 720 AGATCTCGTCAGAGACCATTCCGGCAGAGGAGTCAAGTTTTCCGATCCCGGAGATAACGA 779
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 720 AGATCTCGTCAGAGACCATTCAGGCAGAGGAGTCAAATATTCCGATCCCGGAGATAACGA 779
Query 780 TTCCGACGAAAGATCGCAACAGAGAGATCTTGTTCAATCTATCGTCTCTCTTTTACCTTC 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCCGACGAAAGATCCCAACAGAGAGATCTTGTTCAATCTATCGTCTCTCTTTTACCTTC 839
Query 840 AGACAAAGGACTTTTCCCCA-TCAATTTCCTCTGTTCTCTTCTCCGTTGTGCTGTCTTCT 898
||||||||| || ||||| | ||||||||||||||||||| |||||||| || |||||||
Sbjct 840 AGACAAAGGGCTGTTCCC-AGTCAATTTCCTCTGTTCTCTCCTCCGTTGCGCGGTCTTCT 898
Query 899 TGGACACTTCCTTGACCTGCAAGAATGAGCTCGAGAAGCGAATCTCGGTCGTTCTCGAAC 958
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 899 TAGACACTTCCTTGACCTGCAAGAACGAGCTCGAGAAGCGAATCTCAGTCGTTCTAGAAC 958
Query 959 ACGTCTCTGTCGACGATCTTTTGATCCCGTCTTTCACCTATGACGGCGAACGGTTACTAG 1018
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ACGTCTCCGTCGACGATCTTTTGATCCCGTCTTTCACCTACGACGGCGAACGGTTACTAG 1018
Query 1019 ATCTCGATAGTGTCAGAAGAATCATCTCTGCTTTCGTTGAAAAAGAGAAAAACGTCGGTG 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1019 ATCTCGATAGTGTCAGAAGAATCATCTCTGCTTTCGTGGAAAAAGAGAAAAACGTTGGTG 1078
Query 1079 TTTTCAATGGCGGAGACTTCAACAGAGGAGTCTGCTCTGTTTCGCTTCAAAGAGTAGCTA 1138
||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1079 TTTTCAACGGTGGAGACTTCAACAGAGGAGTCTGCTCTGTTTCACTACAAAGAGTAGCTA 1138
Query 1139 AAACCGTTGATTCTTATTTAGCGGAGATAGCTACTTACGGAGAGCTAACGATCTCAAAAT 1198
|||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1139 AAACAGTTGATTCTTACTTAGCGGAGATCGCTACTTACGGAGACCTAACAATCTCCAAAT 1198
Query 1199 TCAACGCGATAGCTAATCTTGTTCCGAAATCCGCTAGAAAATCAGACGACGATCTCTACA 1258
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAACGCGATTGCGAATCTTGTCCCGAAATCCGCTAGAAAATCAGACGACGATCTCTACA 1258
Query 1259 GAGCGATAGACATCTTCTTGAAAGCTCATCCGAATCTAGACGAGATCGAAAGAGAGAAAG 1318
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1259 GAGCTATAGACATCTTCTTGAAAGCTCATCCGAATCTAGACGAGATCGAAAGGGAAAAAG 1318
Query 1319 TATGTAGCTCAATGGATCCTTTAAAGCTTTCTTACGACGCACGTCTCCACGCTTCACAGA 1378
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 TGTGTAGCTCAATGGATCCCTTAAAGCTTTCTTACGACGCACGTCTTCACGCTTCACAGA 1378
Query 1379 ACAAGAGATTACCGGTGAACATCGTTCTTCACGCTCTTTACTACGATCAGTTAAAGCTAA 1438
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACAAGAGATTACCAGTAAACATTGTTCTTCACGCTCTTTACTACGATCAGTTAAAGCTAA 1438
Query 1439 GAAGCGGAGTCGAAGAACAAGAAGAAAGAGCAGTAGTTGTTCTCCCTGAAGCTTTAAAGA 1498
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAAGTGGAGTCGCAGAACAAGAAGAAAGAGCAGTAGTTGTTCTCCCTGAAGCTTTAAAGA 1498
Query 1499 CACGTAGCCAGCTTCAAGCTGATACTACGTTAGCTAAAGAAAACGAAGCGTTGAGAAGTG 1558
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CACGTAGCCAACTGCAAGCTGATACTACGTTAGCTAAAGAAAACGAAGCGTTGAGAAGTG 1558
Query 1559 AGCTGATGAAGATGAAGATGTATGTTTCGGATATGCAGAAGAATAAGAATGGCGCAGGAG 1618
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1559 AGCTGATGAAGATGAAAATGTATGTTTCGGATATGCAGAAGAATAAGAACGGTGCAGGAG 1618
Query 1619 CTTCTTCTTCGAATTCGTCGTCGTTGGTGAGTACTAAGAAGAACAAACATACTTTCTTCT 1678
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1619 CTTCTTCTTCGAATTCGTCGTCGTTGGTGAGTAGTAAGAAGAGCAAACATACTTTCTTCT 1678
Query 1679 CTTCTGTTTCAAAGAAACTTGGGAAGTTAAATCCGTTTAAAAATGGGTCTAAGGATACTT 1738
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CTTCTGTTTCCAAGAAACTTGGGAAGTTAAATCCGTTTAAAAATGGGTCTAAGGATACTT 1738
Query 1739 CGAACATAGATGAAGATCTTGCAGGTGTTGATATTACTAAACCAAGGAGACGAAGATTCT 1798
|| |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 1739 CGCACATAGATGAAGATCTTGGAGGTGTTGACATTACTAAGCCAAGGAGACGAAGATTCT 1798
Query 1799 CAATCTCATGAA-GAAAATGTTTGATCATTAGTG-TGTGTGGGCTTTTGTGTATAACTCC 1856
||||||| | || ||||| |||||||| | |||| | | || | | |||||||||||||
Sbjct 1799 CAATCTCTTAAAAGAAAACGTTTGATC-TAAGTGCTTT-TGTG-TGTTGTGTATAACTCT 1855
Query 1857 TTTAGACTAGTGTGCttttt-ttA--TT-T-GATGCGTGAttttttttG--GGGTGTGTG 1909
||||||||||||||||| || || || | ||||||||||||||||| |||||||||
Sbjct 1856 TTTAGACTAGTGTGCTTATTGTTCCCTTCTTGATGCGTGATTTTTTTTTTTGGGTGTGTG 1915
Query 1910 TGTTTATTGTTTAATGAGATTGGATAATAAA 1940
|||||||||||||||||| |||| |||||||
Sbjct 1916 TGTTTATTGTTTAATGAGCTTGGTTAATAAA 1946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96083843130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5