BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481974
Length=2713
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30600.5 | Symbols: | BTB/POZ domain-containing protein | c... 2302 0.0
AT2G30615.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 529 6e-149
> AT2G30600.5 | Symbols: | BTB/POZ domain-containing protein |
chr2:13036876-13041684 FORWARD LENGTH=3134
Length=3134
Score = 2302 bits (1246), Expect = 0.0
Identities = 1347/1397 (96%), Gaps = 2/1397 (0%)
Strand=Plus/Plus
Query 43 AAGGCAAGTGGTTTTATGAAGAAAGATGGTTGCGGCGAAAGAGAACAAGTTTCTGACGGT 102
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 333 AAGGCAAGAGATTTTATGAAGAAAGATGGTTGCGGCGAAAGAGAACAAGTTTCTGACAGT 392
Query 103 GGCACCTTTCGAGTGTGCGTGGAGTGATGATCTGAAGTTCCGGGAGGCGGGAAGAGGTTG 162
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 393 GGCACCTTTTGAGTGTGCTTGGAGTGATGATCTGAAGTTCCGGGAAGCGGGAAGAGGTTG 452
Query 163 TGTTGCGTTTGATGCGTTTGCTCACAATGATGTCACGGTGGTGTTCAGAGAGAATGTGGG 222
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 453 TGTTGCGTTTGATGCGTTTGCTCACAATGATGTCACGGTGGTGTTTAGAGAGAATGTGGG 512
Query 223 GACGCAACATTACCATTATAAGAAAGATAATAGTCCTCATTACATTGTTATCATCGGTAG 282
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 513 GACTCAACATTACCATTATAAGAAAGATAATAGTCCTCACTACATTGTTATCATTGGTAG 572
Query 283 CAATAGGAATCGTAGGTTGAAGATTCAGGTAGATGGGAAATCTGTGGTCGATGAGGAAGC 342
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 573 CAATAGGAATCGTAGGTTGAAGATTCAGGTAGATGGAAAATCTGTGGTCGATGAGGAAGC 632
Query 343 TTCTGATCTTTGTCGTTGTTCTTTGGAGTTTGAGAGTTACTGGATTAGTATCTATGATGG 402
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 633 TTCTGATCTTTGTCGTTGTTCTTTGGAGTTTCAGAGTTACTGGATTAGTATCTATGATGG 692
Query 403 GTTGATTAGCATTGGTAAAGGTCGGTATCCGTTTCAGAACCTGGTGTTTAAGTGGCAAGA 462
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 693 GTTGATTAGCATTGGTAAAGGTCGGTATCCGTTTCAGAACCTGGTATTTAAGTGGCAAGA 752
Query 463 CCCCAAGCCCAATTGTAATGTCCAGTATGTTGGCT-TGAGCAGCTGGGATAAACATGTTG 521
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 753 CCCCAAGCCCAATTGTAATGTTCAGTATGTTGG-TCTGAGCAGCTGGGATAAACATGTTG 811
Query 522 GATATAGAAACGTGAGTGTGTTTCCTGTGACACACAATCATATCTTGCTGTGGAAGCAAG 581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 812 GATATAGAAACGTGAGTGTGTTTCCTGTGACACATAATCATATCTTGCTGTGGAAGCAAG 871
Query 582 TGGATTGCCGTGAAGTTAAAGGAGATGAGTCTGGTGACGAGAAGTTTGCGGAGGAAGGGA 641
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 872 TGGATTGCCGTGAAGTTAGAGGAGATGAGTCTGGTGACGAGAAGGTTGTGGAGGAAGGGA 931
Query 642 CTGGTTATGATTATGAACAATGGGGACTTGGGAATTTTTTGGAGAGTTGGCAATTATCTG 701
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 932 CTGGTTATGATTATGAACAATGGGGACTTGGGAATTTCTTGGAGAGTTGGCAATTATCTG 991
Query 702 ACACAATCTTTCTTGTTGGTGAAGAGGAAATGGATGTCCCTGCTCACAAGGTTATATTAC 761
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 ACACAGTCTTCCTTGTTGGTGAAGAGGAAATGGATGTCCCTGCTCACAAGGTTATATTAC 1051
Query 762 AAGCATCGGGTAATTTTCCTTTGAGATCATCAGATGGGGATGTCATTCAACTTCGTGGAG 821
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1052 AAGCATCAGGTAATTTTCCTTTGAGATCATCTGATGGGGATGTCATTCAACTTCGTGGAG 1111
Query 822 TATCGTACCCGATTCTTCATGCACTTCTTCAATATATATATACGGGACGGACTCAGATTT 881
| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1112 TGTCGTACCCGATTCTTCATGCTCTTCTTCAATATATCTATACTGGACGAACTCAGATTT 1171
Query 882 TGGAATCAGAACTTGCTCCATTGCGGGATTTAAGTTCTAAGTTTGAAGTGATGCCATTGG 941
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1172 TGGAATCAGAACTTGCTCCATTGCGGGATTTAAGTTCTAAGTTTGAAGTGATGTCATTGG 1231
Query 942 TGAGACAGTGTGAAGAAAGTATAGACCAGTTAAAACTGAGCAAAAAAGAATTTGACCCCT 1001
|||||||||||||||||||||||||||| || ||| ||||||||| || ||||||| |||
Sbjct 1232 TGAGACAGTGTGAAGAAAGTATAGACCATTTTAAATTGAGCAAAACAGCATTTGACTCCT 1291
Query 1002 GCAGAAAAGTCACACTCTCGTGTCCTATTTCTCACCCGTTATCTGGTTTTATGTTCCCAA 1061
|||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1292 GCAGAAAAGTCAAACTCTTGTGTCCTATTTCTCACCCGTTATCTGGCTTTATGTTCCCAA 1351
Query 1062 GTGCTTTCCCTATGGATGTGGGGAAGCTGGTAAAGTTGTACTCAACCGGCGAGTATAGTG 1121
||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 GTGCTTTCCCTGTTGATGTTGGGAAGCTGGTAAAGTTGTACTCAACCGGCGAATATAGTG 1411
Query 1122 ACATAAAAATCTATCTCAGTGACCATAGTCTCACTTTCCAATCTCACAAAGTCATTCTAA 1181
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1412 ACATAAAAATCTACCTCAGTGACCATAGTCTCACTTTCCAATCCCACAAAGTCATTCTAA 1471
Query 1182 GTCTTTGGAGTGTCGCATTTGCCAAGATGTTTACAAATGGGATGAGTGAAAGCCATTCAT 1241
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1472 GTCTTTGGAGTGTTGCATTTGCAAAGATGTTTACAAATGGGATGAGTGAAAGCCATTCAT 1531
Query 1242 CAACGATTTACTTAACCGATGTATCACCAGAAGCATTCAAGGCTATGATGAATTTCATGT 1301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 CAACGATTTACCTAACCGATGTATCACCAGAAGCATTCAAGGCTATGATGAATTTCATGT 1591
Query 1302 ATAGTGGAGAGTTGAACATGGAAGACACTGTGAATTTTGGCACCGAGTTGATCCATCTTC 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1592 ATAGTGGAGAGTTGAACATGGAAGACACTGTGAATTTTGGCACCGAGTTGATTCATCTTC 1651
Query 1362 TCTTTCTAGCTGACCGGTTTGGAGTTGTTCCACTTCATCAAGAATGCTGCAAAATGCTCT 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 TCTTTCTAGCTGACCGGTTTGGAGTTGTTCCACTTCATCAAGAATGCTGCAAAATGCTCT 1711
Query 1422 TGGAGTGCCTCTCAGAG 1438
|||||||||||||||||
Sbjct 1712 TGGAGTGCCTCTCAGAG 1728
Score = 1875 bits (1015), Expect = 0.0
Identities = 1198/1284 (93%), Gaps = 22/1284 (2%)
Strand=Plus/Plus
Query 1437 AGGATTCTGTATGCTCAGTTCTCCAAGTGGTTTCGTCTATCTCATCATGTAAACTCATTG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 AGGATTCTGTATGCTCAGTTCTCCAAGTGGTTTCGTCTATCTCATCATGTAAACTCATTG 1924
Query 1497 AGGAGATGTGCAAGAGGAAGTTCGCCATGCACTTCGACTATTGTACCACTGCAAGTTTGG 1556
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGGAGATGTGCAAGAGGAAGTTCTCCATGCACTTCGACTATTGTACCACTGCAAGTTTGG 1984
Query 1557 ACTTTGTCTTGTTAGATCAGACCGCCTTCAGTGATATTCTTGAGTCTGCAGATCTGACAG 1616
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1985 ACTTTGTCTTGTTAGATCAGACCACCTTCAGTGATATTCTTGAGTCTGCAGATCTGACGG 2044
Query 1617 TGACATCTGAGGAAAAGATTCTTGA-TGCTGTTCTCATGTGGTGCATGAAAGCTGAGGAG 1675
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2045 TGACATCTGAAGAAAAGATTCT-GAATGCTGTTCTCATGTGGTGCATGAAAGCTGAGGAG 2103
Query 1676 TCACACAGTTGGGAAGTAATAGATGAGATGATGAACTATTCTGACCCCAAAATTTTGTTC 1735
|| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 2104 TCGCACAGTTGGGGAGTAATAGATGAGATGATGAACTATGCTGACCCCAAAAGTTTGTTC 2163
Query 1736 AAAGAAAGGCTTCAGTCACTTGATGACCTGCTGCCTCATGTACGCTTCTCTTTGTTGTCA 1795
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 2164 AAAGAAAGGCTTCAGTCACTTGATGACCTGTTACCTCATGTACGCTTCTCTTTGTTGCCA 2223
Query 1796 TATGAGTTGCTTAAAAGGTTAGAAAACAGCAACCTAAGCAAACAAATCCCAGTATTCAAT 1855
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2224 TATGAGTTACTTAAAAGGTTAGAAAACAGCAACCTAAGCAAAGAAATCCCAGTATTCAAT 2283
Query 1856 CGTCTTGTGAATGAGGCTGCTAGCTTCCTAACTTCCGGATTGATATGCCCAGGAAATGAA 1915
|||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2284 CGTCTTTTGAAGGAGGCTGCTAGCTTCCTAACATCCGGATTGATATCCCCAGGAAATGAA 2343
Query 1916 CCGATTTCAAGGTTCCAACATCGGAGTTCGAGTTTCAAGGAGCTTCAGTTCATACGTGAT 1975
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2344 CCGATTTCAAGATTCCAACATCGGAGATCGAGTTTCAAGGAGCTTCAGTACATACGTGAT 2403
Query 1976 GGGGATAGCAATGGGGTGCTGCACTTTGTGGGTACATCTTATGGTAGTCATCAATGGGTC 2035
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2404 GGGGACAGCAATGGGGTGCTGCACTTTGTGGGTACATCTTATGGTAGTCATCAGTGGGTC 2463
Query 2036 AACCCCGTTCTTGCAAAGAAAATCATCATTACATCGAGCAGCCCCACCTCCAGATTCACT 2095
||||||||||| ||||||||||||| |||||||||||| || ||||| ||||||||||||
Sbjct 2464 AACCCCGTTCTCGCAAAGAAAATCAACATTACATCGAGTAGTCCCACATCCAGATTCACT 2523
Query 2096 GATCCAAAGGCTTTGGCTTCAAAAACCTATGTGGGTACTTCCTTTGCAGGACCTAGGATG 2155
|||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct 2524 GATCCAAAGGCTTTGGCTTCAAAAGCCTATGCGGGTACTTCCTTTGCAGGGCCTAGGATG 2583
Query 2156 GAAGACGGCCATATATCATCCTGGTGGATGGTGGACTTAGGCGAA-AATCATCAGCTTAT 2214
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 2584 GAAGACGGCCATATATCATCCTGGTGGGTGGTGGACTTAGGCGAAGAA-CATCAGCTTAT 2642
Query 2215 GTGCAACTACTACACCTTCAGACAAGACGGATCAAGAGCATTCACAAGATCCTGGAAGTT 2274
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2643 GTGCAACTATTACACCTTCAGACAAGACGGATCAAGAGCATTCACAAGATTCTGGAAGTT 2702
Query 2275 TCAGGGATCGATGGATGGGAAAACATGGACGGACTTGAGAGTTCATGAGGATGACCAGAC 2334
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 2703 TCAGGGATCGATGGATGGGAAAACATGGACAGACTTGAGAGTCCATGAGGATGACCAAAC 2762
Query 2335 AATGTGCAAGGCTGGTCAGTTTGCATCATGGCCAATCACAGCAGCAAATGCGTTACTTCC 2394
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 2763 AATGTGCAAGGCCGGTCAGTTTGCATCATGGCCAATCACCGCAGCAAATGCATTACTCCC 2822
Query 2395 CTTTAGGTTTTTCAAGCTGGTTCTGACCGGTCCAACCGCAGACT-CATCAACTCCTTGGA 2453
|||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||
Sbjct 2823 CTTTAGGTTTTTCAGGCTGGTTCTGACCGGTCCAACTGCAGA-TACATCAACTCCGTGGA 2881
Query 2454 ACTTTTGCATTTGCTTCCTGGAACTCTATGGTTACTACCGTTGAAGCG-TCTGCAATGAA 2512
||||||||||||||| | |||| ||||| ||||||| ||||||||||| |||||||||||
Sbjct 2882 ACTTTTGCATTTGCTACTTGGAGCTCTACGGTTACTTCCGTTGAAGCGCTCTGCAATGAA 2941
Query 2513 AATGGCCTTTTGACTGTCTTCTACTACAC--GATTTTCAC-TCTTATCCTGTTTACCTTT 2569
|| |||||||||||| ||||||||||| | |||| || | |||||||||||||||||
Sbjct 2942 --TGACCTTTTGACTGT-TTCTACTACACACGTTTTTGACGT-TTATCCTGTTTACCTTT 2997
Query 2570 TGTTCTTGTTCTTGTTCTACAGTGATCTTTGAATCTGAACGTGTTTCTACAAGAAATGTT 2629
||||||||| || ||||||||||||||| ||||| |||||||| ||| | |||||
Sbjct 2998 TGTTCTTGTACT------ACAGTGATCTTTGAACCTGAAAGTGTTTCT-CAATATATGTT 3050
Query 2630 AAAGTTGATTCCAGTTAGATTGTTTTGATTTTTATGCAAGAGATTCCGGGCTGTGGCTGT 2689
||| ||||||||||||||||||||||| ||||||| ||||||||| || || |||||||
Sbjct 3051 AAACTTGATTCCAGTTAGATTGTTTTGGTTTTTATACAAGAGATTT-GGCCTATGGCTGT 3109
Query 2690 AGAGTAATGAGTTCTACTTTGTTT 2713
|||||||||||| ||||||||||
Sbjct 3110 GGAGTAATGAGTTATACTTTGTTT 3133
> AT2G30615.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box and associated interaction domains-containing
protein (TAIR:AT2G43445.1); Has 51 Blast hits to 50 proteins
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:13041085-13042586 REVERSE LENGTH=1502
Length=1502
Score = 529 bits (286), Expect = 6e-149
Identities = 393/442 (89%), Gaps = 18/442 (4%)
Strand=Plus/Minus
Query 2277 AGGGATCGATGGATGGGAAAACATGGACGGACTTGAGAGTTCATGAGGATGACCAGACAA 2336
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1332 AGGGATCGATGGATGGGAAAACATGGACAGACTTGAGAGTCCATGAGGATGACCAAACAA 1273
Query 2337 TGTGCAAGGCTGGTCAGTTTGCATCATGGCCAATCACAGCAGCAAATGCGTTACTTCCCT 2396
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1272 TGTGCAAGGCCGGTCAGTTTGCATCATGGCCAATCACCGCAGCAAATGCATTACTCCCCT 1213
Query 2397 TTAGGTTTTTCAAGCTGGTTCTGACCGGTCCAACCGCAGACT-CATCAACTCCTTGGAAC 2455
|||||||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct 1212 TTAGGTTTTTCAGGCTGGTTCTGACCGGTCCAACTGCAGA-TACATCAACTCCGTGGAAC 1154
Query 2456 TTTTGCATTTGCTTCCTGGAACTCTATGGTTACTACCGTTGAAGCG-TCTGCAATGAAAA 2514
||||||||||||| | |||| ||||| ||||||| ||||||||||| |||||||||||
Sbjct 1153 TTTTGCATTTGCTACTTGGAGCTCTACGGTTACTTCCGTTGAAGCGCTCTGCAATGAA-- 1096
Query 2515 TGGCCTTTTGACTGTCTTCTACTACAC--GATTTTCAC-TCTTATCCTGTTTACCTTTTG 2571
|| |||||||||||| ||||||||||| | |||| || | |||||||||||||||||||
Sbjct 1095 TGACCTTTTGACTGT-TTCTACTACACACGTTTTTGACGT-TTATCCTGTTTACCTTTTG 1038
Query 2572 TTCTTGTTCTTGTTCTACAGTGATCTTTGAATCTGAACGTGTTTCTACAAGAAATGTTAA 2631
||||||| || ||||||||||||||| ||||| |||||||| ||| | |||||||
Sbjct 1037 TTCTTGTACT------ACAGTGATCTTTGAACCTGAAAGTGTTTCT-CAATATATGTTAA 985
Query 2632 AGTTGATTCCAGTTAGATTGTTTTGATTTTTATGCAAGAGATTCCGGGCTGTGGCTGTAG 2691
| ||||||||||||||||||||||| ||||||| ||||||||| || || ||||||| |
Sbjct 984 ACTTGATTCCAGTTAGATTGTTTTGGTTTTTATACAAGAGATTT-GGCCTATGGCTGTGG 926
Query 2692 AGTAATGAGTTCTACTTTGTTT 2713
||||||||||| ||||||||||
Sbjct 925 AGTAATGAGTTATACTTTGTTT 904
Score = 126 bits (68), Expect = 1e-27
Identities = 74/77 (96%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 2207 CAGCTTATGTGCAACTACTACACCTTCAGACAAGACGGATCAAGAGCATTCACAAGATCC 2266
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1495 CAGCTTATGTGCAACTATTACACCTTCAGACAAGACGGATCAAGAGCATTCACAAGATTC 1436
Query 2267 TGGAAGTTTCAGGGATC 2283
||||||||||||| |||
Sbjct 1435 TGGAAGTTTCAGGTATC 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134748408898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5