BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481979
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30620.1 | Symbols: | winged-helix DNA-binding transcriptio... 1373 0.0
> AT2G30620.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr2:13044931-13046511 FORWARD LENGTH=1495
Length=1495
Score = 1373 bits (743), Expect = 0.0
Identities = 958/1054 (91%), Gaps = 46/1054 (4%)
Strand=Plus/Plus
Query 391 ATGTCAACAGAAGAAGAAAACGTTCCAACGACTGTTGAATCAGGAGCTGCTGATACAACG 450
||||| | ||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 430 ATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACG 489
Query 451 GTGAAAGCTCCGGAGAAGAAACCGACGGCGAAAGGTGGTAAATCTAAGAA-A--ACGA-- 505
|||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 490 GTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACG 549
Query 506 -C----G--ACGAAGAAGCCGGTGAAAGCTGCTGCTCCGACGAAAAAGAAAACTTCTTCT 558
| | ||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 550 GCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCC 609
Query 559 TCTCACCCTCCCTATGAAGAGATGATTAAGGACGCTATAGTAACGTTGAAGGAGAGAACT 618
||||||||| ||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 610 TCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACT 669
Query 619 GGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACACAAATCTCTTCCTCCT 678
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 670 GGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCT 729
Query 679 AATTTTAGGAAGCTTTTACTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTT 738
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTT 789
Query 739 AAAGTCAAAGCTTCTTTCAAGATTCCTTCTGCTAAATCCGCCGCTACACCTAAACC-G-- 795
||||||||||||||||| |||||||||||||||| |||||| || ||||||||||| |
Sbjct 790 AAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCT 849
Query 796 GCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAA-G--G-T--TGC- 848
||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 850 GCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCT 909
Query 849 --TGCTCCTGTTAAAGCTAAAGCGGCGGCTAAAGGAACTAAG-A--------CTAAAGCT 897
|||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct 910 GTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTT 969
Query 898 GTTGCTAAGCCTAAGGTTACTACTGCTAAGCCTAAGGCTAAGGTTACTACTGCTAAACCT 957
||||||||| |||||| | ||||||||| |||||||||||||||||| |||||||||||
Sbjct 970 GTTGCTAAGGCTAAGG-T--TACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCT 1026
Query 958 AAGTCTAAGTCTGTTGCTGCTGTTTCAAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCT 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1027 AAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCT 1086
Query 1018 AAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCTGGTAAAAAAGTT 1077
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1087 AAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTT 1146
Query 1078 GCTGCTCCTGTTAAGAAAGTGGTTGCTGCGACGAAGAAGGCGCCGGCTAAGAGTGTGAAG 1137
|||||||||| ||||||||||| || || || |||||||| ||||||||||||||||||
Sbjct 1147 GCTGCTCCTGCTAAGAAAGTGGCTG-TG--ACTAAGAAGGCTCCGGCTAAGAGTGTGAAG 1203
Query 1138 GCGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGACAAAGAAGTGAGGAAGATGGGTT 1197
| |||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||
Sbjct 1204 GTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGAAGAAGATTGGTT 1263
Query 1198 TAGGATAGGTTTgggggggAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTC 1257
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 TAGGATAGGTTTTGGGGGGAGATTGAATACATGGTGGTGGTTAGCTTCTATAGGGTAGTC 1323
Query 1258 TTGTATAATTGAATCATCCTTGAAGGAGCTTGCTTTCCAAAGtttttttctt-tttactt 1316
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1324 TTGTATAATTGAATCATCCTTGAAGGAGCTTGCTTTCCAAAGTTTTTTACTTGTTT-CTT 1382
Query 1317 tggtttcttgttgaaactcttttttttt-tgtctt-gtaatttttggtttgtttgaattt 1374
||||||||| |||||||| ||||||||| | |||| |||| |||||||||||||||||||
Sbjct 1383 TGGTTTCTTCTTGAAACT-TTTTTTTTTCT-TCTTTGTAAGTTTTGGTTTGTTTGAATTT 1440
Query 1375 taagcttttA-ATCAATAGCTATATTGTGATGGT 1407
||||||||| ||||||||||||| |||||||||
Sbjct 1441 TAAGCTTTTTGATCAATAGCTATAATGTGATGGT 1474
Score = 510 bits (276), Expect = 1e-143
Identities = 326/349 (93%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 1 AATCGCTTAAACACTCaaacaaaaccttaaagaattatctacaaaacgaaaaaaacaaaa 60
||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1 AATCGATTAAACACTCAAACAAAACCTTACAGAATTATCTACACAATGAAAAAAACAAAA 60
Query 61 taaaaattcataaagtaaaaaaaaagttacgataaaatcaatcgaagcaaaaaGCACACC 120
| ||||| ||||||||||| ||||||||| ||||||||||||| |||| |||||||||||
Sbjct 61 TCAAAATCCATAAAGTAAACAAAAAGTTATGATAAAATCAATCAAAGCTAAAAGCACACC 120
Query 121 AACACAACAATACACAAAAGCACCTATCCACATCCATTAACCTCCTCATCCTTACATTCG 180
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 -A-A-TACAATACACAAAAGCACCTATCCACATCCATTAACCTCCGCATCCTTACATTCG 177
Query 181 TAATCCTTAATTATAAACCGTCGATAGATTTAAATCTAACGGTTGAAATTCAAACCTGAG 240
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 TAATCCTAAATTATAAACCGTCGATAGATTTAAATCCAACGGTTGAAATTCAAACCTGAG 237
Query 241 TTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGATACACCGATCCGAGTACTCATCATTTTAACCAATCAGAGAAGAGATTACAAACTCT 297
Query 301 GTCTCATAA-CACATCTGACTATATATATAAACATCATTCCCGTAGTTC 348
||||||||| |||||||||||||||| | | |||||||||| ||||||
Sbjct 298 GTCTCATAAACACATCTGACTATATA-A-A--CATCATTCCCATAGTTC 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5