BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481980
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30630.2 | Symbols: | P-loop containing nucleoside triphosp... 2012 0.0
AT1G06750.2 | Symbols: | P-loop containing nucleoside triphosp... 1376 0.0
> AT2G30630.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:13046672-13049219
REVERSE LENGTH=1983
Length=1983
Score = 2012 bits (1089), Expect = 0.0
Identities = 1174/1215 (97%), Gaps = 5/1215 (0%)
Strand=Plus/Plus
Query 574 TCAGATACTCAGCGCCGATGTAGAGCCTAAGAAGAAGCTAAAGCACATTGTTATGGCGGC 633
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 635 TCAGATACTCAGTGCCGATGTAGAGCCTAAGAAGAAGCTAAAGCACATTGTCATGGCGGC 694
Query 634 TACAAGGGAACAGAGATTTGAGAGGGTGACTAAAAATCTAAAAGTGGCAAGAGTCTTTAA 693
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 695 TACAAGGGAACAGAGGTTTGAGAGGGTGACTAAAAATCTAAAAGTGGCAAGAGTGTTTAA 754
Query 694 CACATTGGTAGAGGAAATGAAAGCAATGGGGATTGCATCTGTTGATGACTCTGAGTGTAC 753
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 755 CACATTGGTAGAGGAAATGAAAGCAATGGGGATCGCATCTGTTGATGACTCAGAGTGTAC 814
Query 754 AGAAGTTATGGCTCCAGTTGCACACAAGGACCGAAGCCCGGTTTTACTCCTTATGGGAGG 813
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 815 AGAAGTTATGGCTCCAGTTGCACACAAGGACCGAAGCCCGGTTCTACTTCTTATGGGAGG 874
Query 814 TGGTATGGGTGCAGGGAAGAGCACTGTGCTTAAAGACATTCTCAAAGAACCGTTTTGGGC 873
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TGGTATGGGTGCAGGAAAGAGCACTGTGCTTAAAGACATTCTCAAAGAACCGTTTTGGGC 934
Query 874 AGGAGCTGATGCTGTGGTGATCGAAGCTGATGCTTTCAAAGAATCTGATGTGATATACAG 933
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 935 AGGAGCTGATGCTGTGGTGATTGAAGCCGATGCTTTTAAAGAATCTGATGTGATATACAG 994
Query 934 AGCTTTAAGCTCCAGAGGCCATGTTGATATGATCAAGACTGCTGAATTCGTTCACCAATC 993
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGCTTTAAGCGCCAGAGGTCATGTTGATATGATCAAGACTGCTGAATTCGTTCACCAATC 1054
Query 994 ATCAACAGATGCAGCATCATCGCTGCTCGTTACAGCTCTCAACGAAGGGCGGGACGTGAT 1053
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1055 ATCAACAGACGCAGCATCATCGCTGCTCGTTACAGCTCTCAACGAAGGGCGAGACGTGAT 1114
Query 1054 AATGGATGGAACACTCTCTTGGGTTCCATTTGTGGTTCAGACCATAACCATGGCAAGGAA 1113
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1115 AATGGATGGAACACTCTCTTGGGTACCATTTGTGGTTCAGACCATAACAATGGCGAGGAA 1174
Query 1114 TGTGCATCGCCATCGTTACAGAATGGGAGCTGGCTACAAGGTTGGTGAGAATGGAGATGT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGTGCATCGCCATCGTTACAGAATGGGAGCTGGCTACAAGGTTGGTGAGAATGGAGATGT 1234
Query 1174 CATAGAGAACTATTGGGAACGCATAGGCGAAAGACAACAACTACAAGATGATGGAAGGGA 1233
|||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||
Sbjct 1235 TATAGAGAACTATTGGGAACGCATAGGCGAAAGGCAACAGCTTCAAGAAGATGGAAGGGA 1294
Query 1234 GAGAAAGCCATACAGGATAGAGTTAGTTGGAGTTGTGTGTGATGCATATTTAGCAGTGAT 1293
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1295 GAGAAAGCCATACAGGATAGAGTTAGTTGGAGTTGTATGTGATGCATATTTAGCAGTGAT 1354
Query 1294 TCGAGGCATTAGGAGAGCAATAATGTGTAGAAGAGCAGTTAGAGTGAGATCTCAGCTGAG 1353
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1355 TCGAGGAATTAGGAGAGCTATAATGTGTAGAAGAGCAGTTAGAGTGAGGTCTCAGCTGAG 1414
Query 1354 ATCTCACAAGAGGTTTGCTG-ATGCGTTTCTTACCTATTGCAACTTAGTTGACAATGCTA 1412
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1415 ATCTCACAAGAGGTTTGC-GAATGCGTTTCTTACCTATTGCAACTTAGTTGACAATGCTA 1473
Query 1413 GACTTTACTGCACCAATGCTCTTGAAGGTTCTCCAAAGCTGATAGGGTGGAAAGAAAAGG 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1474 GACTTTACTGCACCAATGCTCTTGAAGGTTCTCCAAAGCTGATAGGGTGGAAAGAGAAGG 1533
Query 1473 AAAAGACATTGCTAGTGGATCCAGAGGAGATAGACTGTTTGAAGAATGTAGGGAGGTTAA 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AAAAGACATTGCTAGTGGATCCAGAGGAGATAGACTGTTTGAAGAATGTAGGGAGGTTAA 1593
Query 1533 ACGAGAATGCGGATTCTATCTACGAGCTATACAGAAATCCAAATCCTGCTTGTGAAGCTG 1592
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 ACGAGAATGCAGATTCTATTTACGAGCTATACAGAAATCCAAATCCTGCTTGTGAAGCTG 1653
Query 1593 GATCAATATGGAAAGACATTGTTCTTTCTCCTTCAAGATTCAACATTCAACAGGAGCTCA 1652
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1654 GATCAATATGGAAAGACATTGTTCTTTCTCCTTCTAGGTTCAACATTCAACAAGAGCTCA 1713
Query 1653 AATACTCAATTCAGAAAGTCGAAAGATTCAAACAGTATCTCCAAGAAACACCAAGATTGA 1712
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1714 AATACTCAATTCAGAAAGTGGAAAGATTCAAACAGTATCTCCAAGAAACACCAAGAT-GA 1772
Query 1713 GAGACGAAGATAGATAAACGCAGAAGATCTCTTAGCttttttt--CCCGGTATGTCATTC 1770
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1773 GAGATGAAGATAGATAAACGCAGAAGATCTCTTAGCTTTTTTTTTCCCGGTATGTCATTC 1832
Query 1771 ATTTATGTAACTCCT 1785
|||||||||||||||
Sbjct 1833 ATTTATGTAACTCCT 1847
Score = 942 bits (510), Expect = 0.0
Identities = 557/579 (96%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 1 GGACTCAAAGCTATTTTAGTACAGCACACGTGGAGAAAGCAGATACATGGTCTCGTAACA 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 GGACTCAAAGCTATTTTAGTACAACACACGTGGAGAAAGCAGATACATTGTCTCGTAACA 60
Query 61 GAAAAACAAACTCAAGAATGGACCCAATCTTAGAGTTCTAACAATC--AATCTCATGTCT 118
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 G-AAAACAAACTCAAGAATGGACCCAATCTTAGAGTTCTAACAATCTTAATCTCATGTCT 119
Query 119 CTTGATGATCCCCAAAGCAAATCCAGATCAATGTGTGTTCCAGAGTTTAGTAGCAACAAC 178
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 120 CTTGATGATCCCCAAAGCAAATCCAGATCAATGTGTGTTCCAGAGTTTA--A-CAGCAAC 176
Query 179 AACAACACGACGACCTTCACACAGATTTTGGTAATCTCATCCATTGGCTTGCTCTTAGCC 238
|||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 177 AACAACACGACGACCTTCGCACAGATTTTAGTAATCTCATCCATTGGCTTACTCTTAGCC 236
Query 239 CTTGCACTGCACTTCCGTCTCAGGAAGCTACGTCACTCCAAGAACATCCCTCGTCTTAGA 298
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 237 CTTGCACTGCACTTCCGTCTAAGGAAGCTACGTCACTCCAAGAACATCCCTCGTCTCAGA 296
Query 299 TCGTCTCACAAACACAAAGGCCATGAGAAGCTTGAGAGATTCTCTCACTATGTTGTGCGG 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGTCTCAAAAACACAAAGGCCATGAGAAGCTTGAGAGATTCTCTCACTATGTTGTGCGG 356
Query 359 CAAATGGGATTCAAGGACAGGAGAGAATGTCCTCATCTCTGCAAATTAGCTAATGAGTAC 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGATGGGATTCAAGGACAGGAGAGAATGTCCTCATCTCTGCAAATTAGCTAATGAGTAC 416
Query 419 ATAAGAAAATCAGGTAGCTGTGAGGAAGACATTTACAGCTTTTTCTCAGAAGAGCCTGGT 478
|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 417 ATAAGAAAATCAGGCAGCTGTGAGGAAGACATATACAGCTTCTTCTCTGAAGAGCCTGGT 476
Query 479 GCTGATTCTCTCTTCATTAAGCTCGTCGAAGAGTTTGAGAGATGTATTCTCAGTTACTTT 538
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 477 GCTGATTCTCTCTTCATTAAGCTCGTTGAAGAGTTTGAGAGATGTATTCTTAGTTACTTT 536
Query 539 GCTTACCACTGGAGCCATGCGGATCTCATGATCAGTCAG 577
|||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCTTACCACTGGAGCCATGCGGATCTCATGATCAGTCAG 575
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1785 TTAAGGAAGCAAATGTATGACATGATTCAGAGG 1817
|||||||||||||||||||||||||||||||||
Sbjct 1946 TTAAGGAAGCAAATGTATGACATGATTCAGAGG 1978
> AT1G06750.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:2073701-2076505
FORWARD LENGTH=1917
Length=1917
Score = 1376 bits (745), Expect = 0.0
Identities = 1228/1458 (84%), Gaps = 46/1458 (3%)
Strand=Plus/Plus
Query 242 GCACTGCACTT-CCGTCT-CAGGAAGCTACGTCACTCCAAGAA-CATCCCTCGTCTTAGA 298
||| |||| || |||||| | ||| ||||||| || |||| || |||||||||||| | |
Sbjct 287 GCAGTGCA-TTACCGTCTGC-GGAGGCTACGTGACACCAA-AATCATCCCTCGTCTCAAA 343
Query 299 TCGTCTCACAAACACAAAGGCCATGAGAAGCTTGAGAGATTCTCTCACTATGTTGTGCGG 358
|| |||||||||||||||||||||||||| || |||||||||||||| || || | ||
Sbjct 344 TCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTACGTCGCAAGG 403
Query 359 CAAATGGGATTCAAGGACAGGAGAGAATGTCCTCATCTCTGCAAATTAGCTA--ATGAGT 416
|||||||||||||||||||| ||||| ||||| |||||||||| ||||| | | || |
Sbjct 404 CAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGC-AGCA-GAAT 461
Query 417 ACATAAGAAAATCAGGTA-GCTGTGAGGAAGACATTTACAGCTTTTTCTCAGAAGAGCCT 475
||||||| ||||| | | | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 462 ACATAAGTAAATC-TGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAAGAACCT 520
Query 476 GGTGCTGATTCTCTCTTCATTAAGCTCGTCGAAGAGTTTGAGAGATGTATTCTCAGTTAC 535
| ||||||| | |||||||||||||| || || |||||||| ||||| |||||||| |||
Sbjct 521 GATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTCAGCTAC 580
Query 536 TTTGC-TTACCACTGGAGCCATGCGGATCTCATGATCAGTCAGATACTCAGCGCCGATG- 593
||||| || ||||||||||| || ||||||||||| | |||| |||| ||||| ||||
Sbjct 581 TTTGCGTT-TCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCTGATGC 639
Query 594 TAGAGCCTAAGAAGAAGCT-AAAGCACATTGTTATGGCGGCTACAAGGGAACAGA-GATT 651
| ||||| |||| |||||| ||| || ||||| ||||| ||||||||||| | || || |
Sbjct 640 T-GAGCCAAAGAGGAAGCTGAAA-CAAATTGTGATGGCAGCTACAAGGGAGCTGAGGA-T 696
Query 652 TGAGAGGGTGACTAA-AAATCTAAAAGTGGCAAGAGTCTTTAACACATTGGTAGAGGAAA 710
| ||||||||||||| || | |||||||||||||||| || ||||| |||||||||||||
Sbjct 697 TAAGAGGGTGACTAAGAACT-TAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAAA 755
Query 711 TGAAAGCAATGGGGATTGCATCTGTTGATGACTCTG-AGTGTACAGAAGTTATGGCTCCA 769
||| |||||||||| | || ||||| |||||||| | |||| |||||||||||||| |||
Sbjct 756 TGAGAGCAATGGGGCTCGCGTCTGTGGATGACTC-GCAGTGCACAGAAGTTATGGCACCA 814
Query 770 GTTGCACACAAGGACCGAAGCCCGGTTTTACTCCTTATGGGAGGTGGTATGGGTGCAGGG 829
|| || ||||| ||| |||| || || ||||||||||||| ||||| ||||||||||||
Sbjct 815 GTGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGGG 874
Query 830 AAGAGCACTGTGCTTAAAGACATTCTCAAAGAACCGTTTTGGGCAGGAGCTGA-TGCTGT 888
|| |||||||||||||| ||||| ||||||||| | || ||||||||||| || | ||||
Sbjct 875 AAAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACT-CTGT 933
Query 889 GGTGATCGAAGCTGATGCTTTCAAAGAATCTGATGTGATATACAGAGCTTTAAGCTC-CA 947
|||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 934 GGTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTC- 992
Query 948 GAGGCCATGTTGATATGATCAAGACTGCTGAATTCGTTCACCAATCATCAACAGATGCAG 1007
| |||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||||
Sbjct 993 GTGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAG 1052
Query 1008 CATCATCGCTGCTCGTTACAGCTCTCAACGAAGGGCGGGACGTGATAATGGATGGAACAC 1067
| ||||| ||||| || || ||||| |||||||| |||| |||||||||||||| ||||
Sbjct 1053 CTTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACAC 1112
Query 1068 TCTCTTGGGTTCCATTTGTGGTTCAGACCATAACCATGGCAAGGAATGTGCATCGCCATC 1127
|||||||||| || |||||||| ||||| ||||| ||||| ||||| || || || || |
Sbjct 1113 TCTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACC 1172
Query 1128 GTTACAGAATGGGAGCTGGCTACAAGGTTGGTGA-GAATGGAGATGTCATAGAGAACTAT 1186
|||||||||||||||||| |||||||||||||| | |||||| | | | ||||||||||
Sbjct 1173 ATTACAGAATGGGAGCTGGATACAAGGTTGGTGATG-ATGGAGTTATAACAGAGAACTAT 1231
Query 1187 TGGGAACGCATAGGCGAAAGACAACA-ACTACAAGATGATGGAAGGGA-GAGAAAGCCAT 1244
|||||||| || || ||||| ||||| | | ||||| ||||| | | |||||| || |
Sbjct 1232 TGGGAACGAATTGGTGAAAGGCAACAGA-TTCAAGAGGATGG-TCGTAGGAGAAAACCGT 1289
Query 1245 ACAGGATAGAGTTAGTTGGAGTTGTGTGTGATGCATATTTAGCAGTGATTCGAGGCATTA 1304
| || ||||| |||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 1290 ATAGAATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTA 1349
Query 1305 GGAGAGCAATAATGTGTAGAAGAGCAGTTAGAGTGAGATCTCAGCTGAGATCTCACAAGA 1364
||||||| || ||||| |||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1350 GGAGAGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAA-A 1408
Query 1365 -GGTTTGCTGATGCGTTTCTTACCTATTGCA-ACTTAGTTGACAATGCTAGACTTTACTG 1422
||||||| || || |||| ||| ||||||| ||| || ||||||||||| || |||||
Sbjct 1409 CGGTTTGCGGAAGCATTTCCTACATATTGCAGCCTT-GTCGACAATGCTAGGCTCTACTG 1467
Query 1423 CACCAATGCTCTTGAAGGTTCTCCAAAGCTGATAGGGTGGAAAGAAAAGGAAAAGACATT 1482
||| || || || ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1468 CACTAACGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATT 1527
Query 1483 GCTAGTGGATCCAGAGGAGATAGACTGTTTGAAGA-ATGTAGGGAGG-TTAAACGAGAAT 1540
|||||| ||| |||| |||||||| ||||||||| | ||||| ||| |||||||||||
Sbjct 1528 GCTAGTAGATACAGAAGAGATAGATTGTTTGAAGCGA-GTAGG-AGGGTTAAACGAGAAC 1585
Query 1541 GC-GGATTCTATCTACGAGCTATACAGA-AATCCAAATCCTGCTTGTGAAGCTGGATCAA 1598
|| || | | || |||||||| || ||| || |||| |||||||||||||| || ||||
Sbjct 1586 GCAGGCTCC-ATTTACGAGCTCTATAGACAACCCAAC-CCTGCTTGTGAAGCAGGTTCAA 1643
Query 1599 TATGGAAAGACATTGTTCTTTCTCCTTCAAGATTCAACATTCAACAGGAGCTCAAATACT 1658
| |||||||||||||||||||| |||||||| || | |||||||||||| |||||||| |
Sbjct 1644 TCTGGAAAGACATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATT 1703
Query 1659 CAATTCAGAAAGTCGAAA 1676
| ||||||||||| ||||
Sbjct 1704 CCATTCAGAAAGTTGAAA 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89909176095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5