BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481988
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2763 0.0
> AT2G30700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61900.1);
Has 68 Blast hits to 67 proteins in 13 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13081847-13085281
REVERSE LENGTH=1940
Length=1940
Score = 2763 bits (1496), Expect = 0.0
Identities = 1724/1828 (94%), Gaps = 39/1828 (2%)
Strand=Plus/Plus
Query 1 CTTTTTGCTTTCCCTTTTGTGTGGTTCATTCAGCTCTCAGTCTTCTTCTTCTTCTGCTAC 60
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 17 CTTTTTGCTTTCCCTTTTGTGTGGTTCA-T---CTCTCAG---TCTTCTTCTTCTGCTAT 69
Query 61 AACGCTCTTCTCCACCACCG--TAATCGATTTTCGATTGTCTCCGACGAAGAGAAGCTGA 118
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 70 AACGCTCTTCTCCATCACCGTATAATCGAGTTTCGATTGTCTCCGACGAAGAGAAGCTGA 129
Query 119 CACTACGACGGCTT--TCAATTTCTAC-----T---G-------CTACCTTTGTGCTCGG 161
|||| | || || ||||||||||| | | |||||||| ||||| |
Sbjct 130 CACTTC--TGGTTTCGTCAATTTCTACTGGGATAAAGCTCTCTACTACCTTTTTGCTCAG 187
Query 162 AGAAAATGGTTTGATTTTCGAGGATGATGAAGGCTTAAGGTTGTTGTAGGA-GTGTTGTT 220
|||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||| ||
Sbjct 188 AGAAAATGGTTTGATTTTCGAGGATGATAAAGGCTTCAGGTTGTTGTA-GAGGTGTTTTT 246
Query 221 GCCAGCTTTGGTGCTGGTCATGGCTTTTATCTGACTACCGTATGTGCCTTTTGATGAAAC 280
|||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||
Sbjct 247 GCCAGCCTTGGTGCTGGTCATGGATTTTATCTGACTATCGTATGTGCC-TTTGATGAAAC 305
Query 281 TAAATAATGCCCCGGGGAGAGTTAGCTATGGGCTCTTTAGAGACTGTTTCTTGGCTTAAG 340
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 306 TAAATAATGCCCCGGGGAGAGTTAGCTATGGGCTCTTTAGAGACTGTTTGTTGGCTTAAG 365
Query 341 GGCTGTTTGGTTTATCGCTTCTTGTTATTTATTATCTGGTTATCAAGCTTCCAAGATGTA 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGCTGCTTGGTTTATCGCTTCTTGTTATTTATTATCTGGTTATCAAGCTTCCAAGATGTA 425
Query 401 GCTGCGCATGATAAGCTTAATGAGCATAGTAGCAGATCGACAACCTCTGAATTGGCAAAT 460
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 426 GCTGCGCATGATAAGCTTAATGAGCATAGTAGCAGATCCACAACCTCTGAATTGGCAAAT 485
Query 461 CCACCTGGTATTGGAGTATCTGGTCCCATTCAAGTATCGCCGTCCGTGATTCCCAAATAT 520
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 486 CCACCTGGTATTGGAGTATCTGGTCCCATTCAAGTATCACCGTCCGTAATCCCCAAATAT 545
Query 521 GCATCTCCTGCTCTACCTTGGACACCACCAATGTACCCTACTTTTCCTGATACATATGAA 580
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GCATCCCCTGCTCTACCTTGGACACCACCAATGTACCCTACTTTTCCTGATACATATGAG 605
Query 581 CCCAAGTTAACCGGCAAATGTCCTACAGACTTTCAAGCAATTTCTAGTATTATCGATACA 640
||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 606 CCCAAGTTAACTGGCAAATGTCCTACAGACTTTCAAGCAATTTCAAGTGTTATCGATACC 665
Query 641 GCAGCTTCTGATTGTTCCCAACCGTTTGCTGCACTTGTTGGGAACGTGATATGTTGTCCA 700
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 666 GCAGCTTCTGATTGTTCCCAACCATTCGCTGCACTTGTTGGGAACGTGATATGTTGTCCG 725
Query 701 CAGTTTGTTAGCTTACTTCATATTTTCCAAGGACAGCACAACGTGAAGTCAG-ATAAGTT 759
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 726 CAGTTTGTTAGCTTACTTCATATATTCCAAGGACAGCACAACGTGAAGTC-GAATAAGTT 784
Query 760 GGTTCTGCCTGATGCAGTTGCTACAGATTGTTTTTCAGATATAGTTAGTATCCTGGTCAG 819
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 785 GGTTCTGCCTGATGCAGTTGCTACAGATTGTTTTTCAGATATCGTTAGCATCCTGGTCAG 844
Query 820 TAGAAGAGCCAACATGACAATACCTGCACTTTGCTCTGTAACATCGTCAAATCTAACTGG 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CAGAAGAGCCAACATGACAATACCTGCACTTTGCTCTGTAACATCGTCAAATCTAACTGG 904
Query 880 AGGTTCCTGTCCAGTAACAGATGTCACAACGTTCGAGAAAGTTGTTAACAGTAGCAAATT 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGGTTCCTGTCCAGTAACAGATGTCACAACGTTCGAGAAAGTTGTTAACAGTAGCAAATT 964
Query 940 ACTGGATGCCTGTCGCACTGTTGATCCTCTTAAGGAGTGTTGTAGGCCTATTTGCCAACC 999
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 965 ACTGGATGCCTGTCGCACAGTTGATCCTCTGAAGGAGTGTTGTAGGCCAATTTGCCAACC 1024
Query 1000 TGCAATTATGGAAGCTGCGCTTATTATTTCGGGACACCAAATGACAGTTGGTGATAAGAT 1059
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 TGCAATTATGGAAGCTGCGCTAATTATTTCGGGACACCAAATGACAGTTGGTGATAAGAT 1084
Query 1060 CCCTTTAGGAGGATCAAATAACGTCAACACAATTAATGACTGCAAAAATGTGGTGTTTTC 1119
|||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1085 CCCTTTAGCAGGATCAAATAACGTCAACGCAATTAACGACTGCAAAAATGTGGTGTTTTC 1144
Query 1120 ATATCTTTCCAGGAAGCTTCCGGCAGACAAAGCCAACGCCGCATTTAGAATTTTATCGTC 1179
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1145 ATATCTTTCCAGGAAGCTTCCCGCAGACAAAGCAAACGCTGCATTTAGAATTTTATCGTC 1204
Query 1180 CTGCAAAGTTAACAAAGCTTGCCCGTTGGAATTTAAGGAGCCAGCGGAAGTGATCAAGGC 1239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1205 CTGCAAAGTTAACAAAGCTTGCCCGTTGGAATTTAAGGAGCCAACGGAAGTGATCAAGGC 1264
Query 1240 TTGTCGTAATGTGGCTGCTCCAAGCCCTTCTTGCTGTAGCTCGTTGAATGCATACATCTC 1299
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1265 TTGCCGTAATGTGGCTGCTCCAAGCCCTTCCTGCTGTAGCTCGTTGAATGCATACATTTC 1324
Query 1300 TGGGATACAGAACCAAATGCTAATAACAAACAAGCAGGCCATAGTCTGTGCAACAGTCAT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TGGGATACAGAACCAAATGCTAATAACAAACAAGCAGGCCATAGTCTGTGCAACAGTCAT 1384
Query 1360 CGGTTCTATGTTACGTAAAGGTGGTGTTATGACAAATATCTATGAGCTTTGTGATGTCGA 1419
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CGGTTCTATGTTAAGGAAAGGTGGTGTTATGACAAATATCTATGAGCTTTGTGATGTCGA 1444
Query 1420 TCTCAAAGATTTCAGTGTCCAAGCATATGGAATGCAACAAGGTTGTCTTCTGAGAAGCTA 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TCTCAAAGATTTCAGTGTCCAAGCATATGGAATGCAACAAGGTTGTCTTCTGAGAAGCTA 1504
Query 1480 TCCTGCAGACTTGATATTTGACAACACATCAGGCTACAGCTTTACATGTGATTTGACAGA 1539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1505 TCCTGCAGACTTGATATTTGATAACACATCAGGCTACAGCTTTACATGTGATTTGACAGA 1564
Query 1540 CAACATTGCTGCCCCGTGGCCATCTTCATCGTCAATGACTTCTTTGTCTCTCTGTGCTCC 1599
|||||||||||| || ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1565 CAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCC 1624
Query 1600 AGAGATGTCATTACCTGCCTTGCCAACATCTCAGACTATTAAAAATCAAGGGTTTCGCAA 1659
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 1625 TGAGATGTCATTACCTGCCTTGCCAACATCCCAGACTATTAAAAATCACGGGTTTTGCAA 1684
Query 1660 TGGTGGGGTTGGAGCGTTTCGTCTCATTATTTGGGTATTCCTTCTGTATGTTGTTGT-G- 1717
|||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||| |
Sbjct 1685 TGGTGGGGTTGGAGCGTTGCGTCTCATTGTTTTGGTATTTCTTCTGTATGTTGTTGTTGT 1744
Query 1718 -AGACATTAAAATGAGATTTAGGAGGAGGGTTTTGTTTTTGGTAGTCAGTGAGGACTTTG 1776
||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1745 GAGACATTAAAAAGAGGTTTAGGAGG-G--TTTTGTTTTTGGTAGTCAGTGAGGACTTTG 1801
Query 1777 GAGAAAACAATGGTAAGCTCAATTTTCT 1804
|| |||||||||||||||||||||||||
Sbjct 1802 GATAAAACAATGGTAAGCTCAATTTTCT 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5