BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481989
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30720.1 | Symbols: | Thioesterase/thiol ester dehydrase-is... 2237 0.0
> AT2G30720.1 | Symbols: | Thioesterase/thiol ester dehydrase-isomerase
superfamily protein | chr2:13089369-13091687 REVERSE
LENGTH=1752
Length=1752
Score = 2237 bits (1211), Expect = 0.0
Identities = 1384/1466 (94%), Gaps = 17/1466 (1%)
Strand=Plus/Plus
Query 30 TCGTAGATCCATGAGATCTTCAGCGGGAAAGCTTCTCTCCCATTCTCTACGGAGAAACCG 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TCGTAGATCCATGAGATCTTCAGCGGGAAAGCTTCTCTCCCATTCTCTACGGAGAAACCG 199
Query 90 CGGGAAACATGTTGCCGGAGGCCATGGATTTTGGATTCCGGCTACAAGGTCGTCATCGAA 149
|||||||| || || | |||||||||||||||||||||| ||||| ||| |||
Sbjct 200 CGGGAAAC---TT---GG-TG--ATGGATTTTGGATTCCGGCTACGAGGTC-TCA--GAA 247
Query 150 GATGTTGATTTCGACGGTACCGTCAGATGAAAAACCTGATCAAAATTCAATCGATGCAGG 209
||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 248 GATGTGGAATTCGACGGTACCGTCAGATGAAAATCCTGATCAAAATTCGATCGATGCAGG 307
Query 210 ATCTTCAATGCGGAAACCAATTAGCTTATGGCCTGGAATGTATCATTCTCCGGTGACTAA 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ATCTTCAATGCGGAAACCAATTAGCTTATGGCCTGGAATGTATCATTCTCCGGTGACTAA 367
Query 270 TGCGCTTTGGGAAGCTAGACGTAATATGTTCGAAAGCCCTACCGGAGACGACGATTCTCT 329
|||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||
Sbjct 368 TGCGCTTTGGGAAGCTCGTCGTAATATGTTCGAAATTCCTACCGGAGACGACGCTTCTCA 427
Query 330 GTCAAAATTGACGGCTAAGTCTCCGTCGCGAAGCCGGACTTCGATTCTCTACAAGTTTTC 389
|||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||
Sbjct 428 GTCAAAATTGACGGCTAAATCTCCGTCTCGAAGCCGAACGTCAATTCTCTATAAGTTTTC 487
Query 390 TTCTGATTTTGTTCTTAGAGAACAGTATAGGAATCCTTGGAATGAGATTCGTACTGGTAA 449
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 488 TTCTGATTTTGTTCTTCGAGAACAATATAGGAATCCTTGGAATGAGATTCGTACTGGTAA 547
Query 450 ATTGGTTGAAGATCTTGATGCTCTTGCTGGAACCATCTCCTTCAAGCATTGTGGTGGTGA 509
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 548 ATTGGTTGAAGATCTTGACGCTCTTGCTGGAACCATCTCCTTCAAGCATTGTGGTGGTGA 607
Query 510 TAGCAGTGCGAGATCGATGATTTTGGTGACTGCTTCAGTGGATAGGATTATCATGAAAAG 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CAGCAGTGCGAGATCGATGATTTTGGTGACTGCTTCAGTGGATAGGATTATCATGAAAAG 667
Query 570 ACCAATTCGTGTTGATGTTGACCTCAGTATAGTTGGCGCTGTTACATGGGTTGGGAGATC 629
||| |||||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 668 ACCTATTCGTGTAGATACTGACCTTAGTATAGTTGGTGCTGTTACATGGGTTGGTAGATC 727
Query 630 ATCCATGGAGATGCAATTACAAGTACTCCAAAGTCAAGATACCATCAATTCCGCTGAGTC 689
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||
Sbjct 728 ATCCATGGAGATGCAATTACAAGTACTCCAAATTCAAGATACCAACAACTCCTCTGAGTC 787
Query 690 GGTTGCCCTTGAAGCAAACTTTACATTTGTGGCTCGAGATGCCCAGACAGGCAAGTCAAC 749
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
Sbjct 788 GGTTGCCCTTGAAGCAAACTTTACATTCGTGGCTCGGGATGCTCAGACAGGCAAGTCAGC 847
Query 750 TCCAATTAACCAAGTCGTGCCTGAAACTGAGCATGAAAAATTTCTGTGGAAAGAGGCAGA 809
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCCAATTAACCAAGTCGTGCCAGAAACTGAGCATGAAAAATTTCTGTGGAAAGAGGCAGA 907
Query 810 AGAGAGGAATAAACTACGAAAACAAAAGAGAGCACAAGGTAAAGAAGAGCATGAGAAGTT 869
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 908 AGAGAGGAACAAACTACGAAAACAAAAGAGAGCACAGGGTAAAGAAGAGCATGAGAAGTT 967
Query 870 GAAGGACTTAGAGAGGTTAAATGAGTTATTAGCAGAAGGACGAGTATTCCTGGACATGCC 929
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GAAGGACTTAGAGAGGCTAAATGAGTTATTAGCAGAAGGACGAGTATTCCTGGACATGCC 1027
Query 930 GGCTCTTGCAGATCGGAACAGCATCCTAATTAAGGATACTTACCATGAAAACTCATTGAT 989
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1028 AGCTCTTGCAGATCGGAACAGCATCCTAATTAAGGATACTTCCCATGAAAACTCATTGAT 1087
Query 990 CTGCCAGCCACAGCAACGGAATATTCATGGCAGAATTTTTGGAGGCTTCTTGATGCGCAA 1049
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CTGCCAGCCACAGCAACGAAATATTCATGGCAGAATTTTTGGAGGCTTCTTGATGCGCAA 1147
Query 1050 AGCTTTTGAGCTGGCCTTCTCCAATGCTTACACCTTCGCTGGGGTTTCACCACGTTTTCT 1109
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AGCTTTTGAGTTGGCTTTCTCCAATGCTTACACCTTCGCTGGGGTTTCACCACGTTTTCT 1207
Query 1110 TGAAGTTGATCGCGTCGATTTTATCAAACCAGTAGATGTTGGAAATTTCCTTCGTTTCAA 1169
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1208 CGAAGTTGATCGCGTCGATTTTATCAAACCAGTGGATGTTGGAAATTTCCTTCGTTTCAA 1267
Query 1170 ATCACGAGTATTGTACACAGAAGCTAAC-AGTTCTGCTGAACCGCTGATAAACATCGAGG 1228
||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 1268 GTCACGCGTATTGTACACAGAAGC-AACCAGTTCAGCTGAACCGCTGATAAACATCGAGG 1326
Query 1229 TTGTAGCTCATGTTACAAGTCCAGAGCTCAGGTCCAGCGAAGTCTCTAACAGGTTCTACT 1288
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1327 TTGTAGCTCATGTTACAAGTCCAGAGCTCAGATCCAGCGAAGTCTCCAACAGGTTTTACT 1386
Query 1289 TCACCTTCAGTGTGAGACCTGAGGCCATGAAAGATGGATTGAAAATAAGGAATGTGGTTC 1348
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1387 TCACCTTCAGTGTGAGACCTGAGGCCATGAAAGATGGATTGAAAATAAGAAATGTGGTTC 1446
Query 1349 CAGCAACAGAAGAAGAAGCTAGAACG-GTAATCGAGCGCATGGACGCAGAGAGACCCATC 1407
|||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1447 CAGCAACAGAAGAAGAAGCTAGAA-GAGTGATCGAGCGCATGGACGCAGAGAGACCCATC 1505
Query 1408 TCATCGCCTTGACCGCGGCATTTGAACTGTTGATATCGGTAAACAAGAGAAACCC-AGTC 1466
|||| ||||||| || |||||||||| |||||| ||||||||||||||||| | ||||
Sbjct 1506 TCATTGCCTTGATTGCCGCATTTGAACAGTTGATTTCGGTAAACAAGAGAAAACATAGTC 1565
Query 1467 TGACTAAAATATGAATAAGAAGCCAT 1492
||||||| ||||||||||||||||||
Sbjct 1566 TGACTAATATATGAATAAGAAGCCAT 1591
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 AAAAAATCACTGTAGCGTGATTAGCACTT 29
|||||||||||||||||||||||||||||
Sbjct 17 AAAAAATCACTGTAGCGTGATTAGCACTT 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5