BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481995 Length=2091 Score E Sequences producing significant alignments: (Bits) Value AT2G30780.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2813 0.0 > AT2G30780.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13116474-13118808 FORWARD LENGTH=2181 Length=2181 Score = 2813 bits (1523), Expect = 0.0 Identities = 1928/2117 (91%), Gaps = 54/2117 (3%) Strand=Plus/Plus Query 24 AAATTTTTAATCCATGACATCGAATTTTATGAAATTCAGCAGTCAATTTATCGGCAAATT 83 ||||| |||| |||| |||| |||||| ||||| || |||||||||||||||||||| | Sbjct 61 AAATTCGTAATTCATGGCATCAAATTTTGTGAAACTCGGCAGTCAATTTATCGGCAAACT 120 Query 84 CACCCGTGTAACTAGCTTACCAGCTCATCACACTGATTTGGTTCAAAGGGTTTCGATTTT 143 |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 121 CACCCGAGTAACTAGCTTACCAGCTCATCACACTGATTTGGTCCAAAGAGTTTCGATTTT 180 Query 144 AAAAGACGAGCTTTTAACGATTGGTAATAGTAAGGAAAAGTTCCAAAACGTTTTGGATCA 203 ||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 181 AAAAGACGAGCTTTTAACGATTGGTAACAGTAAGGAGAAGTTCCAAAATGTTTTGGATCA 240 Query 204 GAAAGGGCAATGGTTGTTTAAAAGTTATCGTGATGGTGCTGGGATCTTGGAGCTTATGGA 263 |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| Sbjct 241 GAAAGGGCAATGGTTGTTTAGAACTTATCGTGATGGTGCTGGGATCTTAGAGCTTATGGA 300 Query 264 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGGCAGAA 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 301 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGACAAAA 360 Query 324 GGATTACTGTATCCCATTGACATCGGAGGAGTATGCCAAAGGAATCAAAATTGCGGGTCG 383 |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct 361 GGATTATTGTATCCCCTTGACATCGGAGGAGTATGCTAAAGGAATCAAAATTGCGGGTAG 420 Query 384 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAA-GTC 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 421 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAATG-C 479 Query 443 AGACTGCTTCAGTTTACAATGCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGATG 502 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct 480 AGACTGCTTCAGTTTATAATTCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGAGG 539 Query 503 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCTCCGACCGTTGTGA 562 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 540 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCGCCGACCGTTGTGA 599 Query 563 CCTATAATATTCTAGTATCAGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 622 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 600 CATATAATATTCTAGTATCTGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 659 Query 623 CTTTCGAAGAATTACAAAAACTGAAGCTTTCTCCCAATTCTGTCACTTACAACTTTCTGA 682 |||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||||| | Sbjct 660 CTTTTGAAGAGTTACAAAAAGTGAAGCTTCCTCCTAATTCTGTCACTTACAACTTTCTAA 719 Query 683 TTGCTGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 742 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTGCGGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 779 Query 743 AGAGGGGTCTAGTTGAGCCAGATACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 802 ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 780 AGAGGGGTCCAGTTGAGCCTGACACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 839 Query 803 ATTCTGGGAATTTGAATAAGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 862 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 840 ATTCTGGGAATTTGAATAGGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 899 Query 863 TAAACAGTAGTCCTTTGGTCAGAGCGATGATCTGTGCATATTCTAAGAAAGCTGTTGATG 922 |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| | Sbjct 900 TAAACAGTGGTCCTTTGGTCAGAGCTATGATCTGTGCATATTGTAAGAAAGCTGTTGAGG 959 Query 923 ATAGAGTCCAAAAGGTTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 982 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 ATAGAGTCCAAAAGATTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 1019 Query 983 GGTTGAACGGGCTTTTGATTCGACTATATGCTCAAGAAGACATTGTGGAAGCAATGGAGG 1042 ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1020 GGTTGAATGTGCTTTTGATTCGACTATATGCTCAAGAAGACTTTGTGGAAGCAATGGAGA 1079 Query 1043 GTAAAATCAACGAGGCATTTGAGCATAAGACATGTGTTAATAAGTCAAGTATTATGCGGG 1102 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1080 GTAAAATCAACGAGGCATTTGAGCAGAAGACATGTGTTAATAAGTCAAGTATCATGCGAG 1139 Query 1103 CAATAATTGCAGCCTACTTCAGGTGTAATGAAGTTGACAATCTTGCTTATTTCGTCAAGC 1162 |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1140 CAATCATTGCAGCTTACTTCAGGTGTAATGAAGTTGACAATCTTGCTAATTTCGTCAAGC 1199 Query 1163 GTGCTGAGTCTGCTGGCTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1222 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GTGCTGAGTCTGCTGGGTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1259 Query 1223 ATGGATCCCAAAAACGTTTTGAAGAAATGGAAGGTGTTTTAAATGAGATGGCAGAGACTA 1282 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1260 ATGGATCCCAAAAACGCTTTGAAGAAATGGAAGGTGTTGTAAATGAGATGGCAGAGACCA 1319 Query 1283 ACTATGGGCTTGTGACTAAAACGTTCGCCATTATGTAT-AAGGCTTATAAAAATCATGGA 1341 | ||||||||||| ||||||||||||||||||||| || || ||||||||||| |||||| Sbjct 1320 ATTATGGGCTTGTAACTAAAACGTTCGCCATTATG-ATTAAAGCTTATAAAAACCATGGA 1378 Query 1342 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAATGATGCTGAAACGTGGGCTTTAGATGAAC 1401 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1379 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAAAGATGCTGAAACGTGGGCTTTAGATGCAC 1438 Query 1402 TTCAATTTGCGCAAAGAATTCTGTTGTTTTGATTTGTTCAGTGTCTTTATCAGGTGTG-- 1459 |||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1439 TTCAGTTTGCACAAAGAATTCTGTTGTTTCGATTTGTTCAGTGTCTTTATCAAGTGTGAA 1498 Query 1460 CGCTGTACCAAACAGAGTATCATATGGTTAGTGCTGTTTCTGCCTTTGCATAAGTCTCCT 1519 | ||| |||||| |||||||| |||||||||||||||||||| ||| || ||||||||| Sbjct 1499 CTCTGG-CCAAACTGAGTATCAAATGGTTAGTGCTGTTTCTGCGTTTTCACAAGTCTCCT 1557 Query 1520 GTTTATAGTGACTTACCAGGGGGTTGTGCTTAGCATTTGGTCTCtttttttATCAATCAG 1579 ||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||| Sbjct 1558 GTTTATAGTGACTTACCAGGGAGTTGTGCTTAGC-TTTGGTCTCCCTTTTTAGCAATCAG 1616 Query 1580 GTTGTAGAACTGTGCTCCATCAGGCTGAATAAAAGATGCTGGATAGGCTTCCATGATCTG 1639 ||||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||| | Sbjct 1617 GTTGTAGAACTGTCCCCCATGAGGCTGAATAAAAGATGCTGGATATGCTTCCATAATCCG 1676 Query 1640 TCATTAGGGGTTTTGGGATGAGACTAGCCCACATTTATTTTCTCGTCATGAGTGACTCAA 1699 ||||||||||||||||||| ||||||| ||||| || ||||| ||||||||||||||||| Sbjct 1677 TCATTAGGGGTTTTGGGATAAGACTAGTCCACAGTTCTTTTC-CGTCATGAGTGACTCAA 1735 Query 1700 CCGTCACTATTCTGCCATAGTTGTACATGTTACGGGCAGAGTTTAAAATGTCCATGGCAG 1759 || |||||| ||||||||||||||||||||||| ||||| |||| |||| |||||||||| Sbjct 1736 CCATCACTAGTCTGCCATAGTTGTACATGTTACAGGCAGGGTTTGAAATTTCCATGGCAG 1795 Query 1760 ATTTTGGTCCTGTTGATAGATGAGAAACC-C-------CA--T-----G--A---A-GAA 1798 |||||| |||||||| |||||||||||| | || | | | | ||| Sbjct 1796 ATTTTGATCCTGTTGGCAGATGAGAAACCTCGGTAAAACAAATTCTCTGTGATCCATGAA 1855 Query 1799 ---CAGTGCCTCCGCTATCTGGA--TATT-C-T-TGCT-G---ATAGGATTAGAAGAGCT 1846 |||||||| | ||||||||| | || | | || | | ||| ||||||||||||| Sbjct 1856 GAACAGTGCCTGCTCTATCTGGACGTCTTACCTGTGTTTGCCGATACGATTAGAAGAGCT 1915 Query 1847 ATGATTTCCTTCTTACT-GAAGGCTCTGCCAAGTGAAGTTATTTCCTTAAAGAGAAACCT 1905 ||||||| |||| || | || ||||||||||||||||||||||||||| ||||||||||| Sbjct 1916 ATGATTTTCTTCCTATTTGATGGCTCTGCCAAGTGAAGTTATTTCCTTGAAGAGAAACCT 1975 Query 1906 GGCTGATGTTGCAGTGGCTTTCTCTTTCTGCCACCCCTGGGTTCAGTTTCCAGATTGTTG 1965 | | |||||||||| || ||||||||||||||||||||||||| | |||||||||||| | Sbjct 1976 GACCGATGTTGCAGCGGGTTTCTCTTTCTGCCACCCCTGGGTTAAATTTCCAGATTGTCG 2035 Query 1966 TTG-TTAG-----GCTATCAACAGTCT-T----GTCTTAGATTCACATACTGCTCTATTG 2014 | ||| | | | || || | |||||| || ||||||||||||| ||| Sbjct 2036 TAACTTAATTTTTGTTGTTGTTAGGCTATCACAGTCTTACATCCACATACTGCTCTGTTG 2095 Query 2015 TTTAGGCTTGAGCCCTGTTTGTAATTTTAAGGAAACCTGATAGCTCAGCTACACATGATG 2074 |||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||||| Sbjct 2096 TTTAGGCTTGAGCCCTGTTTGTAAATTTGAGGAAAACAGATAGCTCAGCTACACATGATG 2155 Query 2075 TTTCAGTATAGTGGGAC 2091 ||||||||||||| ||| Sbjct 2156 TTTCAGTATAGTGAGAC 2172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103664125425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5