BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481995
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30780.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2813 0.0
> AT2G30780.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:13116474-13118808 FORWARD LENGTH=2181
Length=2181
Score = 2813 bits (1523), Expect = 0.0
Identities = 1928/2117 (91%), Gaps = 54/2117 (3%)
Strand=Plus/Plus
Query 24 AAATTTTTAATCCATGACATCGAATTTTATGAAATTCAGCAGTCAATTTATCGGCAAATT 83
||||| |||| |||| |||| |||||| ||||| || |||||||||||||||||||| |
Sbjct 61 AAATTCGTAATTCATGGCATCAAATTTTGTGAAACTCGGCAGTCAATTTATCGGCAAACT 120
Query 84 CACCCGTGTAACTAGCTTACCAGCTCATCACACTGATTTGGTTCAAAGGGTTTCGATTTT 143
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 121 CACCCGAGTAACTAGCTTACCAGCTCATCACACTGATTTGGTCCAAAGAGTTTCGATTTT 180
Query 144 AAAAGACGAGCTTTTAACGATTGGTAATAGTAAGGAAAAGTTCCAAAACGTTTTGGATCA 203
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 181 AAAAGACGAGCTTTTAACGATTGGTAACAGTAAGGAGAAGTTCCAAAATGTTTTGGATCA 240
Query 204 GAAAGGGCAATGGTTGTTTAAAAGTTATCGTGATGGTGCTGGGATCTTGGAGCTTATGGA 263
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 241 GAAAGGGCAATGGTTGTTTAGAACTTATCGTGATGGTGCTGGGATCTTAGAGCTTATGGA 300
Query 264 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGGCAGAA 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 301 TCAACTCTTTCCTCGTCATTACTTAGCTCTTCAGGTTTTAGAGTGGAGGAGAGGACAAAA 360
Query 324 GGATTACTGTATCCCATTGACATCGGAGGAGTATGCCAAAGGAATCAAAATTGCGGGTCG 383
|||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 361 GGATTATTGTATCCCCTTGACATCGGAGGAGTATGCTAAAGGAATCAAAATTGCGGGTAG 420
Query 384 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAA-GTC 442
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 421 AGCTAGGGATATTAACCTTGCAGTCTATCTTTTCGATGAGGCGGCTAAGAAACGAATG-C 479
Query 443 AGACTGCTTCAGTTTACAATGCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGATG 502
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 480 AGACTGCTTCAGTTTATAATTCTTTGATGAGTGTTTACATGTGGAACGGGCTTGCTGAGG 539
Query 503 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCTCCGACCGTTGTGA 562
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AATGTCAGTCGCTTTTTAAAGATTTCAGGAGGCAAACGCATTGTGCGCCGACCGTTGTGA 599
Query 563 CCTATAATATTCTAGTATCAGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 622
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATATAATATTCTAGTATCTGTTTATGGTCGACTTTTGATGGTAAAGAATATGGAAGCAG 659
Query 623 CTTTCGAAGAATTACAAAAACTGAAGCTTTCTCCCAATTCTGTCACTTACAACTTTCTGA 682
|||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||||||| |
Sbjct 660 CTTTTGAAGAGTTACAAAAAGTGAAGCTTCCTCCTAATTCTGTCACTTACAACTTTCTAA 719
Query 683 TTGCTGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 742
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGCGGGTTACATGACTGCCTGGAATTGGGATAAAATGGAAGCTACTTTTCAAGAAATGA 779
Query 743 AGAGGGGTCTAGTTGAGCCAGATACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 802
||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 780 AGAGGGGTCCAGTTGAGCCTGACACAGATACTTATCAGCTAATGCTTCGTGGGTATGCAA 839
Query 803 ATTCTGGGAATTTGAATAAGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 862
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTCTGGGAATTTGAATAGGATGGAAGAAATGTATGAAGTGATTAAAGATCAGGTTGGTG 899
Query 863 TAAACAGTAGTCCTTTGGTCAGAGCGATGATCTGTGCATATTCTAAGAAAGCTGTTGATG 922
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 900 TAAACAGTGGTCCTTTGGTCAGAGCTATGATCTGTGCATATTGTAAGAAAGCTGTTGAGG 959
Query 923 ATAGAGTCCAAAAGGTTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 982
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATAGAGTCCAAAAGATTGAAAATTTATTGAGTCTTCTCTCTGGGGAGGAATATCTTCCTT 1019
Query 983 GGTTGAACGGGCTTTTGATTCGACTATATGCTCAAGAAGACATTGTGGAAGCAATGGAGG 1042
||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 GGTTGAATGTGCTTTTGATTCGACTATATGCTCAAGAAGACTTTGTGGAAGCAATGGAGA 1079
Query 1043 GTAAAATCAACGAGGCATTTGAGCATAAGACATGTGTTAATAAGTCAAGTATTATGCGGG 1102
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1080 GTAAAATCAACGAGGCATTTGAGCAGAAGACATGTGTTAATAAGTCAAGTATCATGCGAG 1139
Query 1103 CAATAATTGCAGCCTACTTCAGGTGTAATGAAGTTGACAATCTTGCTTATTTCGTCAAGC 1162
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 CAATCATTGCAGCTTACTTCAGGTGTAATGAAGTTGACAATCTTGCTAATTTCGTCAAGC 1199
Query 1163 GTGCTGAGTCTGCTGGCTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1222
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTGCTGAGTCTGCTGGGTGGAAACTATGCAGATCTCTCTACCACTGTAAGATCATGATGT 1259
Query 1223 ATGGATCCCAAAAACGTTTTGAAGAAATGGAAGGTGTTTTAAATGAGATGGCAGAGACTA 1282
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1260 ATGGATCCCAAAAACGCTTTGAAGAAATGGAAGGTGTTGTAAATGAGATGGCAGAGACCA 1319
Query 1283 ACTATGGGCTTGTGACTAAAACGTTCGCCATTATGTAT-AAGGCTTATAAAAATCATGGA 1341
| ||||||||||| ||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 1320 ATTATGGGCTTGTAACTAAAACGTTCGCCATTATG-ATTAAAGCTTATAAAAACCATGGA 1378
Query 1342 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAATGATGCTGAAACGTGGGCTTTAGATGAAC 1401
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1379 ATGGAGTCAGATGCTGAGAAAGTGAAGGGAAAGATGCTGAAACGTGGGCTTTAGATGCAC 1438
Query 1402 TTCAATTTGCGCAAAGAATTCTGTTGTTTTGATTTGTTCAGTGTCTTTATCAGGTGTG-- 1459
|||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1439 TTCAGTTTGCACAAAGAATTCTGTTGTTTCGATTTGTTCAGTGTCTTTATCAAGTGTGAA 1498
Query 1460 CGCTGTACCAAACAGAGTATCATATGGTTAGTGCTGTTTCTGCCTTTGCATAAGTCTCCT 1519
| ||| |||||| |||||||| |||||||||||||||||||| ||| || |||||||||
Sbjct 1499 CTCTGG-CCAAACTGAGTATCAAATGGTTAGTGCTGTTTCTGCGTTTTCACAAGTCTCCT 1557
Query 1520 GTTTATAGTGACTTACCAGGGGGTTGTGCTTAGCATTTGGTCTCtttttttATCAATCAG 1579
||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||
Sbjct 1558 GTTTATAGTGACTTACCAGGGAGTTGTGCTTAGC-TTTGGTCTCCCTTTTTAGCAATCAG 1616
Query 1580 GTTGTAGAACTGTGCTCCATCAGGCTGAATAAAAGATGCTGGATAGGCTTCCATGATCTG 1639
||||||||||||| | |||| |||||||||||||||||||||||| |||||||| ||| |
Sbjct 1617 GTTGTAGAACTGTCCCCCATGAGGCTGAATAAAAGATGCTGGATATGCTTCCATAATCCG 1676
Query 1640 TCATTAGGGGTTTTGGGATGAGACTAGCCCACATTTATTTTCTCGTCATGAGTGACTCAA 1699
||||||||||||||||||| ||||||| ||||| || ||||| |||||||||||||||||
Sbjct 1677 TCATTAGGGGTTTTGGGATAAGACTAGTCCACAGTTCTTTTC-CGTCATGAGTGACTCAA 1735
Query 1700 CCGTCACTATTCTGCCATAGTTGTACATGTTACGGGCAGAGTTTAAAATGTCCATGGCAG 1759
|| |||||| ||||||||||||||||||||||| ||||| |||| |||| ||||||||||
Sbjct 1736 CCATCACTAGTCTGCCATAGTTGTACATGTTACAGGCAGGGTTTGAAATTTCCATGGCAG 1795
Query 1760 ATTTTGGTCCTGTTGATAGATGAGAAACC-C-------CA--T-----G--A---A-GAA 1798
|||||| |||||||| |||||||||||| | || | | | | |||
Sbjct 1796 ATTTTGATCCTGTTGGCAGATGAGAAACCTCGGTAAAACAAATTCTCTGTGATCCATGAA 1855
Query 1799 ---CAGTGCCTCCGCTATCTGGA--TATT-C-T-TGCT-G---ATAGGATTAGAAGAGCT 1846
|||||||| | ||||||||| | || | | || | | ||| |||||||||||||
Sbjct 1856 GAACAGTGCCTGCTCTATCTGGACGTCTTACCTGTGTTTGCCGATACGATTAGAAGAGCT 1915
Query 1847 ATGATTTCCTTCTTACT-GAAGGCTCTGCCAAGTGAAGTTATTTCCTTAAAGAGAAACCT 1905
||||||| |||| || | || ||||||||||||||||||||||||||| |||||||||||
Sbjct 1916 ATGATTTTCTTCCTATTTGATGGCTCTGCCAAGTGAAGTTATTTCCTTGAAGAGAAACCT 1975
Query 1906 GGCTGATGTTGCAGTGGCTTTCTCTTTCTGCCACCCCTGGGTTCAGTTTCCAGATTGTTG 1965
| | |||||||||| || ||||||||||||||||||||||||| | |||||||||||| |
Sbjct 1976 GACCGATGTTGCAGCGGGTTTCTCTTTCTGCCACCCCTGGGTTAAATTTCCAGATTGTCG 2035
Query 1966 TTG-TTAG-----GCTATCAACAGTCT-T----GTCTTAGATTCACATACTGCTCTATTG 2014
| ||| | | | || || | |||||| || ||||||||||||| |||
Sbjct 2036 TAACTTAATTTTTGTTGTTGTTAGGCTATCACAGTCTTACATCCACATACTGCTCTGTTG 2095
Query 2015 TTTAGGCTTGAGCCCTGTTTGTAATTTTAAGGAAACCTGATAGCTCAGCTACACATGATG 2074
|||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||
Sbjct 2096 TTTAGGCTTGAGCCCTGTTTGTAAATTTGAGGAAAACAGATAGCTCAGCTACACATGATG 2155
Query 2075 TTTCAGTATAGTGGGAC 2091
||||||||||||| |||
Sbjct 2156 TTTCAGTATAGTGAGAC 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103664125425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5