BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481998

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein ...   464    2e-130


> AT2G30810.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:13127826-13128666 REVERSE LENGTH=476
Length=476

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 314/344 (91%), Gaps = 6/344 (2%)
 Strand=Plus/Plus

Query  1    AAGAGAAT-AAAATGATGAAGCTCATAGTTTTCTTTGTTGTATCCAGTTTGTTGTTTTCT  59
            ||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct  26   AAGAG-ATCAAAATGATGAAGCTCATAGTTGTCTTTGTTATATCCAGTTTGTTGTTTGCT  84

Query  60   ACTCAATTTTCTAATGGTGAGGAATTAGAGAGTTC-AGCTGATGCACCAGCAATCCACAA  118
            |||||||||||||||||||| ||||||||||| || |||| | ||||| |||||||| ||
Sbjct  85   ACTCAATTTTCTAATGGTGATGAATTAGAGAG-TCAAGCTCAAGCACCTGCAATCCATAA  143

Query  119  GACGGGAGGAGAAGGCTCACTTCGACCTGAAGAATGTCCAAAGGCATGTGAAAT-TCGAT  177
            ||  ||||||||||||||||||  ||| |||||||||||||||||||||| ||| |||||
Sbjct  144  GAATGGAGGAGAAGGCTCACTTAAACCAGAAGAATGTCCAAAGGCATGTG-AATATCGAT  202

Query  178  GTTCAGCGACATCTCACAAGAAACCATGTTTGTTTTACTGCAACAAATGTTGTAGCAAAT  237
            |||| ||||||||||||| |||||||||||||||||  |||||||||||||||| |||||
Sbjct  203  GTTCGGCGACATCTCACAGGAAACCATGTTTGTTTTTTTGCAACAAATGTTGTAACAAAT  262

Query  238  GTTTATGTGTACCGTCAGGAACATATGGACACAAAGAAGAATGTCCTTGCTACGATAATT  297
            |||| |||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  263  GTTTGTGTGTACCATCGGGAACATATGGACACAAAGAAGAATGTCCTTGCTACAATAATT  322

Query  298  GGAGGACCAAAGAAGGTGGACCAAAATGTCCATGATAACAAAAA  341
            ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct  323  GGACGACCAAAGAAGGTGGACCAAAATGTCCATGAAAACAAAAA  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5