BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481999
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1895 0.0
AT2G30830.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 363 4e-99
> AT2G30820.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G06660.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:13129577-13132945 FORWARD LENGTH=1746
Length=1746
Score = 1895 bits (1026), Expect = 0.0
Identities = 1441/1624 (89%), Gaps = 97/1624 (6%)
Strand=Plus/Plus
Query 142 CGACGGATTGGCTTGTTGAGTAGAGAGCCATGGGTTGTCTCTTCGGTTGCTTTCGTGCTA 201
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 195 CGACGGATCGGCTTGTTGAGTAGAGAGCCATGGGTTGTCTCTTCGGTTGCTTCCGTGCTA 254
Query 202 GAGACGACCAATCTACGAATGATTCCGTCTCTCAAGCCAAATC-CAACAGAGGTCATGAG 260
||||||| ||||||| | ||||||||| |||||||||||| | |||||||||||||||
Sbjct 255 AAGACGACGAATCTACTACTGATTCCGTTTCTCAAGCCAAA-CATAACAGAGGTCATGAG 313
Query 261 TCGAAGAATCGTTTGTCAGCTTTATTTCTATCTGAAGAGAACGCAGCTTCGTCGCCTTGT 320
||||||||||||||||||||||| ||||||||| | | |||||||||||||||
Sbjct 314 TCGAAGAATCGTTTGTCAGCTTTGTTTCTATCT-----G-A---AGCTTCGTCGCCTTGC 364
Query 321 CATGATGACAGAGAGGGATCTAGTTTGAATTCTACGCATATTGACAAAGATCTGAAAGAT 380
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||
Sbjct 365 CATGATGACAGAGAGGGATCTAGTTTGAATTCTATGCATATTGATAAAGATCTCAAGGAT 424
Query 381 GAGGCACAGTTTCTTAAAGTTTCCAGCGAGATACCAGCGACACCGATTGAAATTAGGAA- 439
|| ||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||
Sbjct 425 GACGCACAGTTTCTTAAAGTTTCCTGCGAAATACCAGCGACACCAATTGAAGTTAGGAAC 484
Query 440 AGCATCCAAAAAACTGGAAACCCCTCAAGGTGGTGAACATTTAGGGTCTTCCCCTTCTTG 499
| ||||||||||||||||||| ||| ||||||||||||||||| | |||| ||| |
Sbjct 485 A-CATCCAAAAAACTGGAAACTCCTAAAGGTGGTGAACATTTACGATCTT-CCC--C--- 537
Query 500 GATTTCCAGTAACTCTGATGCAGTGTTTCACTTGGATGAGAAAAAGAATGAGCCCTGTGA 559
|||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 538 ---TTCCTGTAACTCTGAAGTAGTGTTTCACTTGAATGAGAAAAAGAATGAGCCCTGTGA 594
Query 560 AGAAATGGGAAGATCATTAGATACTTCAGAGCAAACTCCTAGCAGTTGCTTGACCAATGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 AGAAATGGGAAGATCATTAGATACTTCAGAGCAAACTCCTAGCAGTTGCTTGACCGATGC 654
Query 620 CCGGAACAATGCAAGGACCTCTTCTGCATCTAGTGATGCTAGTGAAGAAAGCATTGGTAC 679
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 CCGGAACAATGCAAGGATCTCTTCTGCATCTAGTGATGATAGTGAAGAAAGCATTGGTAC 714
Query 680 TGTGTTCAGGGATGAGGTGGATAGAACCGGCAAGGCGACACTCAAAGCTGGAAACATTAC 739
|||||||||||||||||||||||||| | || || | |||
Sbjct 715 TGTGTTCAGGGATGAGGTGGATAGAA----C----CG---------GC--G-----TTAG 750
Query 740 AGAAAAGACAAAGTCAGTGTGGTCTGAAATAGACTTTGATCAATCTCACTCTTCTAGTTC 799
||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||
Sbjct 751 AGAAAAGACAAAGTCAGTGCGGTCTGAAATTGACTTTGGTCAATCTTACTCTTCTAGTTC 810
Query 800 TTCCAAAAACAGCACTTCAAGGAAACCTGAAATGGCTGGAAAAACTTTTATCTCAGCAAC 859
|||||||||||| ||| |||| ||||||||||||| ||||||||||| ||||||||| ||
Sbjct 811 TTCCAAAAACAGAACTGCAAGCAAACCTGAAATGGTTGGAAAAACTTCTATCTCAGCTAC 870
Query 860 CTCGCCTAAT-CTGACCTCATTGAAGCTAT--G-T--GA-T---ACCCCTGGAACCATCT 909
||||||| || | |||||| ||||||||| | | || | |||||||||||||| |
Sbjct 871 CTCGCCTTATAC-AACCTCAATGAAGCTATCCGATGAGATTCAAACCCCTGGAACCATTT 929
Query 910 TGCCTGCAAATATGGAATCAGCAGGAAGAGAGAGACCTAGAATCAGGTCGCATTTTGTGC 969
| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 930 TTCCTGCAAATATGGAATCAGCAGGAAGAGAGAGACGTAGAATCAGGTCTCAGTTTGTGC 989
Query 970 ATTCAGCTTCCAATCTAATTGAAAATGCCTCCTTATGTAAGCCCCCA-GAAGACTCTAAT 1028
||||||||||||||||||||| ||||||||| |||||||| | ||| ||||| || |||
Sbjct 990 ATTCAGCTTCCAATCTAATTGTGAATGCCTCCCTATGTAAG-CTCCACGAAGATTCAAAT 1048
Query 1029 GAGAGCCTAGAACAAGCTAAAGTTCAAGCTTGCAAAGAGAAGACAGAAAATGAATCTCCC 1088
| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1049 GCGAACCTAGAACAAGCTAAAGTTCAGGCTTACAAAGAGAAGACAGAAAATGAATCTCCC 1108
Query 1089 ACATCAACAATTTGTGAGGG-AAAGTTGGAAGAGAGTTCAGAT-G-----AA-AGATACC 1140
||||||||||| |||| ||| |||||||||||||||||||||| | || |||||
Sbjct 1109 ACATCAACAATATGTG-GGGAAAAGTTGGAAGAGAGTTCAGATGGAAAAAAACAGATAGG 1167
Query 1141 TCGAAACTAGTAGCTCTCCTTGGGCCTTCTCCATAACTCCTGGAGACAGACCTATCATTG 1200
| |||| |||||| ||||| | || ||||||| |||||||||||||||||||||||
Sbjct 1168 T-GAAATTAGTAGTTCTCC-T-----TTATCCATAAATCCTGGAGACAGACCTATCATTG 1220
Query 1201 GAATGGTTGCTGCGCATTGGAATGAGAAAGAGCAATCTCAAATCTCACCCAAATGGTGGG 1260
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1221 GAATGGTTGCTGCTCATTGGAATGAGAAAGAGCATTCTCAAATCTCACCCAAATGGTGGG 1280
Query 1261 ATGGTAATGGGATACCAAACTCTACAAACAAGTACAAAGAGGACCAGAAAGTGAGTTGGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ATGGTAATGGGATACCAAACTCTACAAACAAGTACAAAGAGGACCAGAAAGTGAGTTGGC 1340
Query 1321 ACGCAACACCATTCGAAGAGAGATTAGAGATGGCACTTTCAGAAGAAGGTGGTCAAGATT 1380
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1341 ATGCAACACCTTTCGAAGAGAGATTAGAGAAGGCACTTTCAGAAGAAGGTGGTCAAGGTT 1400
Query 1381 TCATTCCTCCAAGGAGACTTGGAACAGTGGAAGAGTCTGAAAGGGACACAGCTATATCAC 1440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1401 TCATTCCTCCAAGGAGACTTGGAACAGTAGAAGAGTCTGAAAGGGACACAGCTATATCAC 1460
Query 1441 ATCTGCGACATTCGGCGCAATCTATGTCAGTCATTTCCTTTTGAACATC-GAGTAGTGTC 1499
||||||||||||| | |||| | || ||||||||| | | | ||||||||
Sbjct 1461 ATCTGCGACATTC-----A------GTCA-T--TT-CCTTTTGAA-AGCCGTGTAGTGTC 1504
Query 1500 CACTGAGGTACCT-AAAGTGGAGCAATGGTGAG-TCCCATCGAGTCCTCTAGCCAAGTAA 1557
|||||| | ||| ||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1505 TACTGAGAT-CCTGAAA-TGGAGCAACGGTGAGGTCCCATCGAGTCCTCTAGCCAAGTAA 1562
Query 1558 TGTCTCGCCATCTCGGTCGTGGTTGTGTCTCTGTACTTGGGAGGGTTTTGTTCAGATAGA 1617
|| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1563 TGCCTCGCCATCTCGGTCGTGGTTGTGTTTCTGTACTTGGGAGGGTTTTGTTTAGATAGA 1622
Query 1618 AGCTCTTTAATAGGTC-ATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCG 1676
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGCTCTTTCATAGGTCCATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCG 1682
Query 1677 CTTGAAATGCGTGGTTCTTCGCCTTTATTTGCCAAAACTCTGTGCTCCACACTTACAAAC 1736
||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1683 CTTGAAATGCGAGGTTCTTCGCCTCTATTTGCCAAAACCCTGTGCTCCACACTTACAAAC 1742
Query 1737 TTAT 1740
||||
Sbjct 1743 TTAT 1746
Score = 158 bits (85), Expect = 2e-37
Identities = 135/156 (87%), Gaps = 15/156 (10%)
Strand=Plus/Plus
Query 1 ACCATCACCAACACTCTCTTTCTCTCTCACTTTCTCGGGAAAATA-TTTTCCCTCCTCAT 59
|||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 ACCACCACCAACATTCTCTTTCTCTCTCACTTTCTCGGGAAACTATTTTTCCCTCCTCAT 60
Query 60 T--GA----------G--GTAGGTTCCTCCATCGCTGTTCCTTTTTTACCACCAATAAAA 105
| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TGAGAGTGTTTGGTTGTTGTAGGTTCCTCCATCGCTGTTCCTTTTTTACCACCAATATAA 120
Query 106 TTCAAATTACGACATTAGAGAAACGCTTCATAATTG 141
||||||| ||||||||| ||||||||||||||||||
Sbjct 121 TTCAAATCACGACATTACAGAAACGCTTCATAATTG 156
> AT2G30830.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:13132707-13134284
REVERSE LENGTH=1077
Length=1077
Score = 363 bits (196), Expect = 4e-99
Identities = 222/234 (95%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1510 CCT-AAAGTGGAGCAATGGTGA-GTCCCATCGAGTCCTCTAGCCAAGTAATGTCTCGCCA 1567
||| ||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1071 CCTGAAA-TGGAGCAACGGTGAGGTCCCATCGAGTCCTCTAGCCAAGTAATGCCTCGCCA 1013
Query 1568 TCTCGGTCGTGGTTGTGTCTCTGTACTTGGGAGGGTTTTGTTCAGATAGAAGCTCTTTAA 1627
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1012 TCTCGGTCGTGGTTGTGTTTCTGTACTTGGGAGGGTTTTGTTTAGATAGAAGCTCTTTCA 953
Query 1628 TAGGT-CATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCGCTTGAAATGC 1686
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TAGGTCCATATACTTGCTCATTTGGTATGGTGTGCATGAAGAAAGATGCGCTTGAAATGC 893
Query 1687 GTGGTTCTTCGCCTTTATTTGCCAAAACTCTGTGCTCCACACTTACAAACTTAT 1740
| |||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 892 GAGGTTCTTCGCCTCTATTTGCCAAAACCCTGTGCTCCACACTTACAAACTTAT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5