BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482001
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30840.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1615 0.0
> AT2G30840.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:13135430-13136849
REVERSE LENGTH=1256
Length=1256
Score = 1615 bits (874), Expect = 0.0
Identities = 1032/1108 (93%), Gaps = 12/1108 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGATGGAAGCAAAAAACGATCGTGCTAGTGAGGTAAAAGCTTTCGACGAGAT 60
|||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |
Sbjct 7 GAAGAAGAAGATGGAAGCAACATACGATCGTGCTAGTGAGGTAAAAGCTTTTGACGAGTT 66
Query 61 GAAGATCGGCGTAAAGGGTCTCGTCGACACCGGAGTTACTCAGATCCCACGTATCTTCCA 120
||||||||||||||| |||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 67 GAAGATCGGCGTAAAAGGTCTCCTAGACGCCGGAGTTACTCAGATCCCACGTATCTTCCA 126
Query 121 TCACCCACATCTCAGTTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 180
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCATCCACATCTTAATTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 186
Query 181 ACCAACGATCGATCTCAATGGAGGCGTGTTCGACGAGTCCACAGTCACGCGAGAGAACGT 240
|||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 187 ACCAACAATCGATCTTAAAGGAGGCGTGTTCGACGAGTACACAGTCACGCGAGAGAGCGT 246
Query 241 GATCGCGATGATCAGAGACGCGGTTGAGAAG-TTCGGGTTTTTCCAGGTGATTAACCATG 299
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 247 CATCGCGATGATCAGAGACGCGGTTGAG-AGATTCGGGTTTTTCCAGGTGATTAACCATG 305
Query 300 GGATTCCTATTGATGTTATGGAGAAGATGAAATATGGGATTCGTGGGTTTCATGAGCAAG 359
||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 306 GGATTAGTAATGATGTTATGGAGAAGATGAAAGATGGGATTCGTGGGTTTCATGAGCAAG 365
Query 360 ACTCAGACGTGAGGAAAAAGTTTTATACTCGTGACATCACCAAAA-AGGTCAAGTATAAC 418
|||||||||| |||||||||||||||||||||||| ||||||||| | || |||||||||
Sbjct 366 ACTCAGACGTTAGGAAAAAGTTTTATACTCGTGACGTCACCAAAACA-GTTAAGTATAAC 424
Query 419 AGTAATTTCGATCTTTATAGCTCTCCTTCAGCTAATTGGAGAGATACCTTGAGTTGTTTT 478
|||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 425 AGTAATTTTGATCTTTATAGCTCTCCTTCAGCGAACTGGAGAGATACCTTGAGTTGCTTT 484
Query 479 ATGTCCCCTGATGTTCCTA-AAACAGAGGACTTACCAGATATTTGTGGGGAAATTATGTT 537
||| | ||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 485 ATGGCTCCTGATGTTCC-AGAAACAGAGGACTTACCAGATATTTGTGGGGAAATCATGTT 543
Query 538 GGAGTATTCGAGACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 597
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGAATATGCGAAACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 603
Query 598 TTTAGGGCTGGATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 657
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTTAGGGCTGAATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 663
Query 658 TTCTCATTATTACCCGCCTTGTCCTGAGCCTGATCTT-ACTTTCGGTACAAGTCAGCATT 716
||||||||| |||||||||||||||||||||| | || ||||| || ||||||| |||||
Sbjct 664 TTCTCATTACTACCCGCCTTGTCCTGAGCCTGGT-TTAACTTTTGGCACAAGTCCGCATT 722
Query 717 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCTTC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 723 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCGTC 782
Query 777 AGAATGGTTACTGGGTTGATGTTCCTCCTGTTCCAGGAGCTCTTCTCGTTAATCTCGGAG 836
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 783 AGAATGGTTATTGGGTTGATGTTCCTCCTGTTCCGGGAGCTCTTCTCGTTAACCTCGGAG 842
Query 837 ATCTTTTACAGCTTATGACGAATAA-CAAGTTTTTGAGCGTGGAACATAGAGTTTTGGCT 895
||||||||||||||||||| ||| | || |||| ||||||| || ||||||||| |||||
Sbjct 843 ATCTTTTACAGCTTATGACCAATGATCA-GTTTGTGAGCGTAGAGCATAGAGTTCTGGCT 901
Query 896 AATAGAGGGGAAGAGCCGCGGATCTCAGTCGCATCTTTCTTTGTGCATCCTTTACCGAGT 955
|||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 902 AATAAAGGTGAAAAGCCGCGGATCTCAGTAGCATCTTTCTTTGTGCATCCTTTACCGAGT 961
Query 956 TTGCGAGTTTATGGACCGATAAAAGAGCTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1015
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 962 TTACGAGTTTATGGACCGATAAAAGAACTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1021
Query 1016 GACACTACAGTCAGTGAGTACACAAACCATTACATGGCGAGAGGACTCGATGGGAAAT-C 1074
|||||||| |||| ||||||||| | ||||||||||| |||||||| |||| |||| |
Sbjct 1022 GACACTACCGTCACTGAGTACACGAGTCATTACATGGCAAGAGGACTTTATGG-AAATTC 1080
Query 1075 TGTGTTGCTTGATTTCAAGATCTGATAA 1102
||||||||||||||||||||||||||||
Sbjct 1081 TGTGTTGCTTGATTTCAAGATCTGATAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5