BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482003
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30860.1 | Symbols: ATGSTF9, GLUTTR, ATGSTF7, GSTF9 | glutat... 1181 0.0
> AT2G30860.1 | Symbols: ATGSTF9, GLUTTR, ATGSTF7, GSTF9 | glutathione
S-transferase PHI 9 | chr2:13138997-13140245 FORWARD
LENGTH=971
Length=971
Score = 1181 bits (639), Expect = 0.0
Identities = 787/855 (92%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 57 AAAGAGAGAAGAAAGAAAGATGGTGCTAAAGGTGTACGGACCTCACTTTGCTTCACCAAA 116
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAAAAGAGAAGAAAGAAAAATGGTGCTAAAGGTGTACGGACCTCACTTTGCTTCACCAAA 176
Query 117 GCGAGCTTTGGTAACGTTGATCGAGAAGGGCGTTGCCTTCGAGACCATCCCCGTCGATCT 176
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGAGCTTTGGTCACACTGATCGAGAAGGGCGTTGCCTTCGAGACCATCCCCGTCGATCT 236
Query 177 CATGAAAGGAGAACACAAGCAGCCTGCTTATCTCGCTCTACAGCCTTTTGGTACCGTTCC 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 CATGAAAGGAGAACACAAGCAGCCTGCTTATCTCGCTCTACAGCCTTTTGGTACTGTTCC 296
Query 237 TGCTGTTGTCGACGGAGACTACAAAATCTTCGAATCACGTGCGGTGATGAGGTACGTAGC 296
||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 297 TGCTGTTGTTGACGGTGACTACAAAATCTTCGAGTCCCGTGCGGTGATGAGGTACGTAGC 356
Query 297 CGAGAAGTACAGGTCACAAGGACCTGATCTTTTGGGGAAAACCGTTGAAGACAGAGGTCA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGAGAAGTACAGGTCACAAGGACCTGATCTTTTGGGGAAAACCGTTGAAGACAGAGGTCA 416
Query 357 AGTGGAGCAATGGCTCGACGTGGAAGCCACCACTTACCACCCACCGCTCTTGAACTTGAC 416
||| || |||||||| || |||||||| |||||||||||||||||||| |||||||| ||
Sbjct 417 AGTTGAACAATGGCTTGATGTGGAAGCGACCACTTACCACCCACCGCTATTGAACTTAAC 476
Query 417 GCTACACATAATGTTTGCATCAGTCATGGGATTCCCATCTGATGAGAAACTGATCAAGGA 476
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 GCTTCACATAATGTTCGCATCAGTCATGGGATTCCCATCTGATGAGAAGCTGATCAAGGA 536
Query 477 GAGCGAGGAGAAGCTCGCGGGTGTTCTCGATGTGTACGAGGCACATCTCTCGAAGAGCAA 536
||| || |||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 537 GAGTGAAGAGAAGCTTGCGGGTGTTCTTGATGTCTACGAGGCACATCTCTCAAAGAGCAA 596
Query 537 GTACTTGGCCGGTGATTTCGTGAGCTTGGCTGATTTGGCTCACCTCCCGTTCACTGATTA 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GTACTTGGCCGGTGACTTCGTGAGCTTGGCTGATTTGGCTCACCTCCCGTTCACTGATTA 656
Query 597 CTTGGTTGGTCCGATTGGGAAGGCTTACATGATCAAAGATAGGAAACACGTGAGCGCGTG 656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTGGTTGGTCCGATTGGGAAAGCTTACATGATCAAAGATAGGAAACACGTGAGCGCGTG 716
Query 657 GTGGGATGATATTAGCAGCCGTCCTGCGTGGAAGGAGACTCTTGCCAAGTACTCATTCCC 716
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 717 GTGGGATGATATTAGCAGCCGTCCTGCGTGGAAGGAGACTGTTGCCAAGTATTCATTCCC 776
Query 717 GGCTTAAGATAAGTTCTTCTTCTTGGTGATGTTGTTTGCGTTTTATGTGAGGTTTAATAA 776
||||||||| |||| ||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 777 AGCTTAAGATGTGTTCATCTTCTTGGTGATGTGGTTTGTGTTTTATGAGAGGTTTAATAA 836
Query 777 AAGTGGA--TG--T-TACCTC--------------C----TCTGTGTTCTCTTTCCTTTT 813
||||||| | | |||||| | ||||||||||||||||||||
Sbjct 837 AAGTGGAACTAAATGTACCTCTTAATGTAATGTTGCCACCTCTGTGTTCTCTTTCCTTTT 896
Query 814 GTAGTTTAATAAGTATATCTATCGCTTTGTGAGGCTTTCAATTT-AAGGAAATGATCTTT 872
|||||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 897 GTAGTTTAATAAGTATCTTTATGGCTTTGTGAGGCTTTCAATTTTAAGGAAATGATCTTT 956
Query 873 TCCCCTAGTTTTACT 887
|||||||||| ||||
Sbjct 957 TCCCCTAGTTCTACT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5