BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482004
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30870.1 | Symbols: ATGSTF10, ERD13, ATGSTF4, GSTF10 | gluta... 1447 0.0
> AT2G30870.1 | Symbols: ATGSTF10, ERD13, ATGSTF4, GSTF10 | glutathione
S-transferase PHI 10 | chr2:13141357-13142613 FORWARD
LENGTH=1002
Length=1002
Score = 1447 bits (783), Expect = 0.0
Identities = 903/957 (94%), Gaps = 23/957 (2%)
Strand=Plus/Plus
Query 1 ACCGCAAACGCAGCTAACCAGATCCC--TTT-TCTCTC---TCTTTCCCTCTATAAAATC 54
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 13 ACCGCAAACGCAGCTAACCAGATCCCTTTTTCTCTCTCTTTTCTTTCCCTCTATAAAATC 72
Query 55 GCGTCCTTGCTTGCTATAGTGAGTTTAGAAAGAAACTGATAGTAG--aaaaaaaGAGAGA 112
|||| | | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 73 GCGT-C---C-TGCTATAGTGAGTTTAGAAAGAAACTGATAGTAGAAAAAAAAAGAGAGA 127
Query 113 AGAAAAATGGTGTTGACGATCTATGCGCCTTTATTCGCTTCTTCGAAGAGAGCTGTTGTA 172
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 128 AGAAAAATGGTGTTGACAATCTATGCTCCTTTATTCGCTTCTTCAAAGAGAGCTGTTGTG 187
Query 173 ACTTTGGTGGAGAAGGGAGTATCATTCGAGACCGTCAATGTCGATCTCATGAAAGGAGAA 232
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 188 ACATTGGTGGAGAAGGGAGTATCATTCGAAACTGTCAATGTCGATCTCATGAAAGGAGAA 247
Query 233 CAGAGACAGCCTGAGTATCTCGCGATTCAGCCTTTTGGTAAAATCCCAGTGCTCGTCGAC 292
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 248 CAGAGACAGCCTGAGTATCTCGCGATTCAGCCTTTCGGTAAAATCCCAGTCCTCGTCGAC 307
Query 293 GGAGACTACAAAATCTTCGAGTCACGTGCGATCATGAGGTATATAGCAGAGAAGTATAGA 352
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 308 GGAGACTACAAAATCTTCGAGTCGCGTGCGATCATGAGGTATATAGCAGAGAAGTATAGA 367
Query 353 TCACAAGGACCTGATCTGTTGGGGAAGACGATTGAAGAGAGAGGACAAGTAGAGCAATGG 412
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 368 TCACAAGGACCTGATCTTTTGGGGAAGACTATTGAAGAGAGAGGACAAGTAGAGCAATGG 427
Query 413 CTT-GACGTTGAGGCTACTAGTTACCATCCACCACTATTGGCTTTAACGCTCAACATTGT 471
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 428 -TTAGACGTTGAGGCTACAAGTTACCATCCACCACTATTGGCTTTAACGCTCAACATTGT 486
Query 472 CTTTGCACCACTCATGGGTTTTCCTGCTGATGAGAAAGTTATTAAGGAGAGTGAAGAGAA 531
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTTTGCACCACTTATGGGTTTCCCTGCTGATGAGAAAGTTATTAAGGAGAGTGAAGAGAA 546
Query 532 GCTTGGAGAAGTGCTTGATGTCTATGAAGCTCAGCTTTCAAAGAATGAATACTTGGCTGG 591
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 547 GCTTGCAGAAGTGCTTGATGTCTATGAAGCTCAGCTTTCTAAGAACGAATACTTGGCTGG 606
Query 592 TGATTTTGTGAGTCTAGCTGATTTGGCTCACCTTCCGTTCACTGAGTATCTCGTTGGTCC 651
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 607 TGATTTTGTGAGTCTAGCTGATTTGGCTCACCTTCCTTTCACCGAGTATCTTGTTGGTCC 666
Query 652 TATTGGGAAGGCTCATTTGATCAAGGATAGGAAGCATGTTAGCGCGTGGTGGGATAAGAT 711
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 667 TATTGGGAAGGCTCATTTGATCAAAGATAGGAAGCATGTTAGCGCTTGGTGGGATAAGAT 726
Query 712 TAGTAGCCGTGCTGCGTGGAAGGAGGTTTCCGCAAAGTACTCACTACCTGTTTAAACAAG 771
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 727 TAGTAGCCGTGCTGCGTGGAAGGAGGTTTCCGCTAAGTACTCACTACCTGTTTAAACAAG 786
Query 772 GAGATGTTGACTTGGGG--TTTGTGTGAGCTTTGTGT-CTTGTGAGGGAGTCCGTTT-CG 827
||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 787 GAGATGTTGACTTGGGGGGTTTGTGTGAGCTTTGTGTTCTT-TGAGGGAGTTCGTTTTCG 845
Query 828 GGTCGATTGTCTCT-TTGTTTCATTAAGGAACGGAACTCTGCCTCATTTGTTATCTCTGG 886
|||||||||||| | |||||||| |||| |||||||||||| |||||||||| |||||||
Sbjct 846 GGTCGATTGTCT-TGTTGTTTCAATAAGAAACGGAACTCTGTCTCATTTGTTGTCTCTGG 904
Query 887 TTTCTTGTATTTTGTAACCCTTTCAAGCTTTTCAATAAGAGTTTAAAATCAGAGTGA 943
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 905 TTTCTTGTATTCTGTAACT-TTTCAAGCTTTTCAATAAGAGTTTAAAATCAGAGTGA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5