BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482005
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30880.1 | Symbols: | Pleckstrin homology (PH) domain-conta... 3009 0.0
> AT2G30880.1 | Symbols: | Pleckstrin homology (PH) domain-containing
protein | chr2:13142665-13145916 REVERSE LENGTH=1974
Length=1974
Score = 3009 bits (1629), Expect = 0.0
Identities = 1839/1939 (95%), Gaps = 20/1939 (1%)
Strand=Plus/Plus
Query 33 TTCTTCTTCTTCTTTAACCTCGTCTTCTTCAGCTCATACCT-A-AACCA-A--AAACAAA 87
||||||||||||| |||||||||||||||||||| ||| || | | | | | ||| |||
Sbjct 46 TTCTTCTTCTTCTGTAACCTCGTCTTCTTCAGCTTATA-CTCATAGCTATACCAAAGAAA 104
Query 88 ACCT-TTAAAACCCCATT-TTCTCTCGATTCATCGATCAGCAATTGTCCATTTCTAATCG 145
|||| |||||| ||| || |||||||||| ||||||||||||| | || |||||||||
Sbjct 105 ACCTCTTAAAA-CCC-TTCTTCTCTCGATCCATCGATCAGCAACAATTCACTTCTAATCG 162
Query 146 ATCAAAGAGCTTCCCGATCTCGTCGATCCTAATTAACATGGCTTCCAACGGCGCTTCTCC 205
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 163 ATC-AAGAGCTTTCCGATCTCGTCGATCCCAATTAACATGGCTTCCAACGGCGCTTCTCC 221
Query 206 GAGAATTGTTGATGCTACTGAGAACAGCTTGGATAAGATCAAGCGGCAATTGGCATCTGG 265
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 222 GAGAATTGTTGATGCTACTGAGAACAGCTTGGATAAGATCAAGCGACAATTGGCATCTGG 281
Query 266 CTCTGGTCGGAACTTGCTTCAGGGACCTCTTTTCAAGCGATCTGAAACTCTGAGAAAATG 325
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 282 CTCTGGTCGGAACTTGCTACAAGGACCTCTTTTCAAGCGATCTGAAACTCTGAGAAAATG 341
Query 326 GAACGAAAGATGGGTGATACTTGACCCAACAACAGGGAAAATGGAGTATAAGACAAGACG 385
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 342 GAACGAACGATGGGTGATACTTGATCCAACAACAGGGAAAATGGAGTATAAGACGAGGCG 401
Query 386 AAACGAACCAACTATCAAGGGAACAATTTTGTTTGACGAAAATAGCACAATCTCCATCTC 445
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AAATGAGCCAACTATCAAGGGAACAATTTTGTTTGACGAAAATAGCACAATCTCCATCTC 461
Query 446 TCCTGTCAACTTCCAGGGGCTTCCAAAATATAATGGTTGCTGTATCTATATTGGTACCCC 505
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 462 TCCTGTCAACTTCCAGGGGCTTCCAAAATATAATGGTTGCTGTATTTATATTGGTACCCC 521
Query 506 ACAGAAGAAAGATTACTTTTTGTGTGCAGAGACTCCTGGTGCAGCTAAGGCTTGGGTCAC 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 522 ACAGAAGAAAGATTACTTTTTGTGTGCAGAGACTCCTGGTGCAGCTAAAGCTTGGGTCAC 581
Query 566 AACCTTACATGCGACACAGCTAGTCCTAAAGGCCCATAAGGAGGCTGTCGAATCTCTAAG 625
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 AACCTTACATGCGACACAGCTAGTTCTAAAGGCCCATAAGGAGGCTGTCGAATCTCTAAG 641
Query 626 CGGAAGTGGTTCTGCAACACTTGGTACCGTTGCAACCGTTGTTGCCGCTGCCAATTCAAC 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGGAAGTGGTTCTGCAACACTTGGTACCGTTGCAACCGTTGTTGCCGCTGCCAATTCAAC 701
Query 686 AGCATTGGAATGTTCCAGAGAAATTCAAGCAGCAATGCAGATCTCTTTGAGGAATGCATT 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGCATTGGAATGTTCCAGAGAAATTCAAGCAGCAATGCAGATCTCTTTGAGGAATGCATT 761
Query 746 GAAAATAACGGCAAATAAACCGATCGAGGGACCACTAGATGATTTGACAATAATGAAGGA 805
|||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 762 GAAAATAACGCCAAATAAACCGATTGATGGACCACTAGATGATTTGACAATAATGAAGGA 821
Query 806 AACTCTACGTGTCAAAGATGAAGAATTACATAATTTGGCTC-GAGAACTTCGTTCTCGTG 864
|||||| ||||||||||||||||||||||||||||| || | | ||||||||||||||||
Sbjct 822 AACTCTGCGTGTCAAAGATGAAGAATTACATAATTTAGC-CAGGGAACTTCGTTCTCGTG 880
Query 865 ACGCAATGATAAAGGAAATAGCAGATAAGCTATCTGAGACTGCTGAAGCAGCTGTAGGTG 924
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 881 ACTCAATGATAAAGGAAATAGCAGATAAGCTATCTGAGACTGCTGAAGCAGCTGTAGCTG 940
Query 925 CAGCATCTGCAGCTCATACAATGGATGAACAAAGGAAAATCGTTTGTGTGGAATTTGAGC 984
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CAGCATCTGCTGCTCATACAATGGATGAACAAAGGAAAATCGTTTGTGTGGAATTTGAGC 1000
Query 985 GCTTGACTAAAGACTCACAGAGACAGCAAGAAGCCGCAAAATTAAAGCTCAAGGAATTGG 1044
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1001 GCTTGACTACAGACTCACAGAGACAGCAAGAAGCCACAAAATTAAAGCTCAAGGAATTGG 1060
Query 1045 AAGAGAAGACATCTACTCTGAGTAAGGAAAAGGATCAATTGGTTAAGGAAAGAGACGCTG 1104
|||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1061 AAGAGAAGACCTTTACTTTGAGTAAGGAAAAAGATCAATTGGTTAAGGAAAGAGACGCTG 1120
Query 1105 CTCTCCAAGAGGCACATATGTGGCGGTCTGAGCTTGGAAAAGCCAGAGAGCGTGTTGTCA 1164
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1121 CTCTCCAAGAGGCACATATGTGGCGGTCTGAGCTTGGGAAAGCCAGAGAGCGTGTTGTCA 1180
Query 1165 TACTTGAAGGAGCTGTTGTGAGGGCCGAAGAGAAAGTGAGGGTTGCAGAAGCAAGTGGTG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1181 TACTTGAAGGAGCTGTTGTGAGGGCCGAAGAGAAAGTGAGGGTTGCAGAAGCAAGCGGTG 1240
Query 1225 AGGCAAAAGCAAAGGAGGCTTCTCAGAGAGAGGCAGCTGCTTGGACAGAGAAGCAAGAGC 1284
| |||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1241 AAGCAAAATCAAAAGAGGCTTCTCAGAGAGAAGCAACTGCTTGGACAGAGAAGCAAGAGC 1300
Query 1285 TTTTAGCATATGTGAATATGTTACAAACTCAGCTTCAAAGGCAGCAACTAGAGACGAAGC 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1301 TTTTAGCATATGTGAATATGTTACAAACTCAGCTTCAAAGGCAGCAACTAGAGACAAAGC 1360
Query 1345 AAGTGTGTGAGGAGAAGACTGAGTCTACGAACGGCGAAGCTTCTCTTCCAATGACAAAGG 1404
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1361 AAGTGTGTGAGGAGAAGACTGAGTCTACTAACGGCGAAGCTTCTCTTCCAATGACAAAGG 1420
Query 1405 AAACAGAAAAGAATGTGGATAAAGCATGTCTGAGTATTTCAAGAACAGCCTCAATACCGG 1464
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1421 AAACAGAAAAGAATGTGGATAAAGCATGTCTGAGCATTTCAAGAACAGCCTCTATACCGG 1480
Query 1465 GAGAGAGTGTAGTCCATATGAGTGAAGAACAGGTAGTAAACGCTCAGCCTCCGGTTGGAG 1524
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1481 GAGAGAATGTAGTCCATATGAGTGAAGAGCAGGTAGTAAACGCTCAGCCTCCGGTGGGAG 1540
Query 1525 AAAACGAATGGAATGATATTCAGGCAACAGAGGCAAGAGTTTCTGATGTAAGAGAAATAT 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AAAACGAATGGAATGATATTCAGGCAACAGAGGCAAGAGTTTCTGATGTAAGAGAAATAT 1600
Query 1585 CTGCAGAGACTGAACGGGACAGAAGAAATAGCATGGATATCCCGGTAGTGACTCCTGAAC 1644
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 1601 CTGCAGAGACTGAACGGGACAGAAGAAACAGCTTGGATATCCCGGTAGTGTCTCCTGAAC 1660
Query 1645 CTAATGTTCCACGCAATGATCCGCCTTCAGAATCTTTTCATCATCAGCCTTGA-TGAATG 1703
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| | || |
Sbjct 1661 CTAACGTTCCACGCAATGATCCGCCTTCCGAATCATTTCATCACCAGCCTTGAATAAA-G 1719
Query 1704 ATTGGTAGATCTTCGTACATTTTTATATACTCTT-GATGTTCTATTAATGTTTGGAGAGT 1762
||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||
Sbjct 1720 ATTGGTAGATCTTCGTACATTTTAATATACTCTTTGATGGTCTGGTAATGTTTGGAGAGT 1779
Query 1763 TGATTGTTCTAACAAGAAAAAGAATTTGCCTTTTTGGTTTTCTTGTACCTTCAAGAGTTG 1822
||||| ||||||||| |||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 1780 TGATTCTTCTAACAACAAAAAGAATTTGTCTTTTTAGTTTTCTTGTACATTCAAGAGTTG 1839
Query 1823 TCTATGTATCTGCAGCTCTTGAACTTGTCTGACTAGGGAGGGATTCTTCTTTCCCCTGTA 1882
| ||||||||||| ||||||||| ||||||||||||||| ||||||| |||||| | ||
Sbjct 1840 T-TATGTATCTGCCGCTCTTGAATTTGTCTGACTAGGGAATGATTCTT-TTTCCCTTTTA 1897
Query 1883 TTACAACTTGAAGAACAGAGAGATGTGTGTTTAAAACTTTGACTTATGTTTTTGGATTCA 1942
||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 1898 TTACAACATGAAGAACAGAGAGATATGTGTT-AAA-CTTTGACTTATGTTTTTGGATTCA 1955
Query 1943 TATAAACCAGTTTTCATAT 1961
|||||||||||||||||||
Sbjct 1956 TATAAACCAGTTTTCATAT 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5