BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482009
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30910.1 | Symbols: ARPC1A, ARPC1 | actin-related protein C1... 2200 0.0
AT2G31300.1 | Symbols: ARPC1B, ARPC1 | actin-related protein C1... 1936 0.0
> AT2G30910.1 | Symbols: ARPC1A, ARPC1 | actin-related protein
C1A | chr2:13153214-13157107 FORWARD LENGTH=1608
Length=1608
Score = 2200 bits (1191), Expect = 0.0
Identities = 1398/1494 (94%), Gaps = 29/1494 (2%)
Strand=Plus/Plus
Query 21 CGTCGTCGAGCTCCGGATCTCATCGGCGTTTCATC---ATTCTCCGTCGATCTATTCACC 77
||||||| | ||||||||||||||||||||||||| ||| || ||| |||||||||||
Sbjct 85 CGTCGTCCACCTCCGGATCTCATCGGCGTTTCATCATAATTATCTGTCCATCTATTCACC 144
Query 78 GTACGACTCCGTTATTAGGAATCTGTAGATGTCAATTTGAGAGAAAAGACTATC-T--GT 134
||||||||||||| |||||||||||| |||||||||||||||||||||||| || | |
Sbjct 145 GTACGACTCCGTT-TTAGGAATCTGTGGATGTCAATTTGAGAGAAAAGACTGTCTTCATT 203
Query 135 -C-TC-CA-TT---ACAAC----A-CA-TTATGGCGGTGGTGGATGTTCATCGGTTCGCT 181
| | || || ||||| | || | ||||| ||||||||||||||||| ||||||
Sbjct 204 ACAACACATTTGGGACAACAAGGATCACTCATGGCAGTGGTGGATGTTCATCGTTTCGCT 263
Query 182 GAGTCAATCACTTGCCATGCGTGGAGTCCTGATCACTCCATGGTTGCTCTCTGTCCTAAC 241
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 264 GAGTCAATCACTTGCCATGCTTGGAGTCCTGATCTCTCCATGGTTGCTCTCTGTCCTAAC 323
Query 242 AATACTCAAGTTCATATCTATAAATCATCATCTCAAGACCAGTGGGAGAGGTTACATGTC 301
|| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 324 AACACTGAAGTTCATATCTATAAATCATTGTCTCAAGACCACTGGGAGAGGTTACATGTC 383
Query 302 CTCCAAAAGCATGACCAAATTGTTTCTGGAATTGACTGGAGCTCAAAATCCAACAAAATC 361
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 384 CTCCAAAAGCATGACCAAATTGTTTCTGGAATAGATTGGAGCTCAAAGTCCAACAAAATC 443
Query 362 GTCAGTGTTTCTCATGACAGGAACTCGTACGTGTGGAGCCTGGACGGAGGTGAGTGGGTA 421
|||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 444 GTCACTGTTTCTCATGACAGGAACTCGTACGTCTGGAGCCTGGAAGGAGCTGAATGGGTA 503
Query 422 CCAACTCTTGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCGAAA 481
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 504 CCAACTCTCGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCCAAA 563
Query 482 GAGAACAAGTTCGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTACGAGCAA 541
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 564 GAGAACAAGTTTGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTATGAGCAA 623
Query 542 GAGAATAACTGGTGGGTCAGTAAACTTATCCGGAAAAGGCACGAATCTTCAGTCACATCT 601
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 624 GAGAATAACTGGTGGGTCAGTAAGCTAATCCGGAAAAGGCACGAATCTTCAGTCACATCT 683
Query 602 GTTGCTTGGCATCCTAATAATATTCTTCTGGCAACGACATCTACAGATGGAAAATGTCGG 661
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 684 GTTGCTTGGCATCCTAATAATGTTCTTCTGGCAACGACATCAACAGATGGAAAATGTCGG 743
Query 662 GTATTTTCAACATTCATCAAAGGAGTTGATACAAAGGATTCAAAAGCAGGCTCACCAGCG 721
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 744 GTATTTTCAACATTTATCAAAGGAGTTGACACAAAGGATTCAAAAGCAGGCTCACCAGCG 803
Query 722 GAAACTAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 781
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GAAACGAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 863
Query 782 GTGAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGCCATAGCTCCATGATTTAC 841
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 864 GTTAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGTCATAGCTCCATGATTTAC 923
Query 842 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 901
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 924 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTTCGAGATTTGCCT 983
Query 902 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGTGTTGGATATGACAGCAAT 961
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 984 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGCGTGGGATATGACAGCAAC 1043
Query 962 CCAATGGTATTTG-CTGCAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGA 1020
|| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCGATGGTATTTGCCT-CAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGA 1102
Query 1021 GAAGAAAGCGGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCCGAAGCATTTGGAAA 1080
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1103 GAAGAAAGCAGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCTGAAGCATTTGGAAA 1162
Query 1081 ATTCTACGGTAGTCAATCAAAGTCTGCAACAGCCAATGATGCTTCTGAATCACGTGGACG 1140
||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 1163 ATTCTACGGCAGTCAATCAAAGTCCACAACAGCCAACGATGCTTCTGAATCACGTGGAGG 1222
Query 1141 CGTTCATGATAACTGCATAAATTCTATTGTGCCTCTGAGCAAAGCAGGGAGTCCTAAAGT 1200
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1223 TGTTCATGATAACTGCATAAATTCCATTGTGTCTCTGAGCAAAGCAGGGAGTCCTAAAGT 1282
Query 1201 TATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTAGCCATATGGGATCTGGAGAACAT 1260
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1283 AATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTTGCCATATGGGATCTGGAGAACAT 1342
Query 1261 GGAACAAGAACTTGGCAATCAGTTTTAATAAACACACAAATAAAACAAATCTGGATCACA 1320
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1343 GGAACAAGAACTTGGCAATCAGTTTTAATAAACACACAAATAAAACAATTCTGGCTCACA 1402
Query 1321 AGCAACGTTTTACTTAT-TTTATAACT-CTTTTTCCAATTTCGTATTTGTTTCACTTTGT 1378
||||| |||||||||| |||| |||| ||||||| ||||||||| ||||||||||||||
Sbjct 1403 AGCAAGGTTTTACTTAAGTTTA-AACTACTTTTTC-AATTTCGTAATTGTTTCACTTTGT 1460
Query 1379 AAACTACAATAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGCAGGTATTATTAATA 1438
||||| | | |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1461 AAACTGCCACAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGCAGGTATTA--A-TA 1517
Query 1439 AGTTTCTTGGCTTCATGATTTGATTCATTTAGTTAGCATCTGGTAATACATTTT 1492
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1518 AGTTTCTTGGCTTCATGATTTGATTCATTTAGTTAGCATCTTGTAATACCTTTT 1571
> AT2G31300.1 | Symbols: ARPC1B, ARPC1 | actin-related protein
C1B | chr2:13346122-13349980 REVERSE LENGTH=1521
Length=1521
Score = 1936 bits (1048), Expect = 0.0
Identities = 1325/1452 (91%), Gaps = 46/1452 (3%)
Strand=Plus/Plus
Query 21 CGTCGTCGAGCTCCGGATCTCATCGGCGTTTCATC---ATTCTCCGTCGATCTATTCACC 77
||||||| ||||||||||||||||||||||||||| ||| || ||| |||||||||||
Sbjct 45 CGTCGTCAAGCTCCGGATCTCATCGGCGTTTCATCATAATTATCTGTCCATCTATTCACC 104
Query 78 GTACGACTCCGTTATTAGGAATCTGTAGATGTCAATTTGAGAGAAAAGACTATC-T--GT 134
||||||||||||| |||| |||||||||||||||||||||||||||||||| || | |
Sbjct 105 GTACGACTCCGTT-TTAGAAATCTGTAGATGTCAATTTGAGAGAAAAGACTGTCTTCATT 163
Query 135 -C-TC-CA-TT---ACAAC----A-CA-TTATGGCGGTGGTGGATGTTCATCGGTTCGCT 181
| | || || ||||| | || | ||||| ||||||||||||||||| ||||||
Sbjct 164 ACAACACATTTGGGACAACAAGGATCACTCATGGCAGTGGTGGATGTTCATCGTTTCGCT 223
Query 182 GAGTCAATCACTTGCCATGCGTGGAGTCCTGATCACTCCATGGTTGCTCTCTGTCCTAAC 241
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 224 GAGTCAATCACTTGCCATGCTTGGAGTCCTGATCTCTCCATGGTTGCTCTCTGTCCTAAC 283
Query 242 AATACTCAAGTTCATATCTATAAATCATCATCTCAAGACCAGTGGGAGAGGTTACATGTC 301
|| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 284 AACACTGAAGTTCATATCTATAAATCATTGTCTCAAGACCACTGGGAGAGGTTACATGTC 343
Query 302 CTCCAAAAGCATGACCAAATTGTTTCTGGAATTGACTGGAGCTCAAAATCCAACAAAATC 361
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 344 CTCCAAAAGCATGACCAAATTGTTTCTGGAATAGATTGGAGCTCAAAGTCCAACAAAATC 403
Query 362 GTCAGTGTTTCTCATGACAGGAACTCGTACGTGTGGAGCCTGGACGGAGGTGAGTGGGTA 421
|||| ||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 404 GTCACTGTTTCTCATGACAGGAACTCGTACGTCTGGAGCCTGGAAGGAGCTGAATGGGTA 463
Query 422 CCAACTCTTGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCGAAA 481
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 464 CCAACTCTCGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCCAAA 523
Query 482 GAGAACAAGTTCGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTACGAGCAA 541
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 524 GAGAACAAGTTTGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTATGAGCAA 583
Query 542 GAGAATAACTGGTGGGTCAGTAAACTTATCCGGAAAAGGCACGAATCTTCAGTCACATCT 601
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 584 GAGAATAACTGGTGGGTCAGTAAGCTAATCCGGAAAAGGCACGAATCTTCAGTCACATCT 643
Query 602 GTTGCTTGGCATCCTAATAATATTCTTCTGGCAACGACATCTACAGATGGAAAATGTCGG 661
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 644 GTTGCTTGGCATCCTAATAATGTTCTTCTGGCAACGACATCAACAGATGGAAAATGTCGG 703
Query 662 GTATTTTCAACATTCATCAAAGGAGTTGATACAAAGGATTCAAAAGCAGGCTCACCAGCG 721
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 704 GTATTTTCAACATTCATCAAAGGAGTTGACACAAAGGATTCAAAAGCAGGCTCACCAGCG 763
Query 722 GAAACTAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 781
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GAAACGAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGT 823
Query 782 GTGAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGCCATAGCTCCATGATTTAC 841
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 824 GTTAAATGGTCTCCAAGTGGAAACACCTTAGCATATGTAGGTCATAGCTCCATGATTTAC 883
Query 842 TTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 901
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTTGTTGATGATGTTGGCCCTTCTCCTTTAGCCCAAAGCGTTGCATTCCGAGATTTGCCT 943
Query 902 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGTGTTGGATATGACAGCAAT 961
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 944 CTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGGGTTGGATATGACAGCAAC 1003
Query 962 CCAATGGTATTTGCTGCAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGAG 1021
|| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1004 CCGATGGTATTTGCTGCAGATGATACTGGAATATGGAGCTTCATAAGATACATTGGAGAG 1063
Query 1022 AAGAAAGCGGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCCGAAGCATTTGGAAAA 1081
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1064 AAGAAAGCGGCATCTTCAGGTTCCAGTTACAGTTCGCAGTTTTCCGAAGCGTTTGGAAAA 1123
Query 1082 TTCTACGGTAGTCAATCAAAGTCTGCAACAGCCAATGATGCTTCTGAATCACGTGGACGC 1141
|||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||
Sbjct 1124 TTCTACGGTAGTCAATCAAAGTCTACAACAGCCAACGATGCTTCTGATTCACGTGGAGGC 1183
Query 1142 GTTCATGATAACTGCATAAATTCTATTGTGCCTCTGAGCAAAGCAGGGAGTCCTAAAGTT 1201
|||||||||||| |||||| ||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1184 GTTCATGATAACAGCATAACTTCCATTGTGCCTCTGGGCAAAGGAGGGAGTCCTAAAGTT 1243
Query 1202 ATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTAGCCATATGGGATCTGGAGAACATG 1261
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1244 ATGCGATTCAGCACTTCAGGATTGGATGGCAAAATAGCCATATGGGATCTAGAGAACATG 1303
Query 1262 GAACAAGAACTTGGCAATCAGTTTTAATAAACA-C---A-CAA-A-TAAA---ACA-AAT 1310
|||||||||||||||||||||||||||||| | | | || | | | || |||
Sbjct 1304 CAACAAGAACTTGGCAATCAGTTTTAATAAA-ATCTGGATCAGTAGTCAGCTTACTTAAT 1362
Query 1311 CTGGATCA-CAAGCAACGT-TTT--ACTTAT--TTTATAACTCTTTTTCCAATTTCGTAT 1364
|| || | || | | | ||| ||| | ||| | || |||||||||||||||||
Sbjct 1363 TTGTAT-ATCA-G-ATTTTGTTTCGACT-AGCCTTT-TCAC-CTTTTTCCAATTTCGTAA 1416
Query 1365 TTGTTTCACTTTGTAAACTACAATAATAAAAGGCCTTATTTTCTTGGTTTGTGTAAGGGC 1424
|||| ||||| ||||||| || ||||||| |||| | ||||| ||||||||||||||||
Sbjct 1417 TTGTCACACTTGGTAAACTGCA-TAATAAA-GGCCATGTTTTCCTGGTTTGTGTAAGGGC 1474
Query 1425 AGGTATTATTAA 1436
|||| |||||||
Sbjct 1475 AGGTGTTATTAA 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74798812050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5