BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482011
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30920.1 | Symbols: ATCOQ3, EMB3002, COQ3 | coenzyme Q 3 | c... 1829 0.0
> AT2G30920.1 | Symbols: ATCOQ3, EMB3002, COQ3 | coenzyme Q 3 |
chr2:13157133-13159932 REVERSE LENGTH=1353
Length=1353
Score = 1829 bits (990), Expect = 0.0
Identities = 1095/1145 (96%), Gaps = 9/1145 (1%)
Strand=Plus/Plus
Query 1 CCGACGTCAGTAATTTCCGACCGCCGTTTCCGAAACTCGTGATCGCTTTCTCTTTCGAAA 60
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 49 CCGACGTCAGTAACTTCCGACCGCAGTTTCCGAAACTCGTGATCGCTTTCTCTTTCGAAA 108
Query 61 ATGTTGGCGTCGAAGT-C-GATGAATCAACTACAAAGGCTTCTTCTCTCTGCTCGTCGCT 118
|||||||||||| || | | ||||||| || ||||| |||||||||||||||||||| |
Sbjct 109 ATGTTGGCGTCG--GTACGGGTGAATCAGCTGCAAAGACTTCTTCTCTCTGCTCGTCGAT 166
Query 119 TATCTTCTTC-CCAAATCATACCTCCGTCGTGTTTACTTCACCAGCGCCTGTTCTCGACT 177
|||||||||| || ||| |||||||||||| |||||||||||||||| || |||||||||
Sbjct 167 TATCTTCTTCACC-AATAATACCTCCGTCGCGTTTACTTCACCAGCGGCTATTCTCGACT 225
Query 178 TCAGATACTGATTCTTCGGCTGCATCTTTTTCCTCTTCGCATCCGAAAATGCAAACGCTT 237
||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 226 TCAGACACTGATGCTTCGGCTGCATCTTTTTCTTCTTCGCATCCGAAAATACAAACGCTT 285
Query 238 GAAGGCAAAGCTTCTAATAAAAGCCGAAGCACATCGTCAACAACAACATCTTTGAATGAA 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 286 GAAGGCAAAGCTTCTAATAAAAGCCGAAGCACATCGT---CAACAACATCTTTGAATGAA 342
Query 298 GATGAACTTGCCAAATTCTCTGCCATTGCTGATACCTGGTGGCATTCTGAAGGGCCCTTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 343 GATGAACTTGCCAAATTCTCTGCCATTGCTGATACCTGGTGGCATTCTGAAGGACCCTTT 402
Query 358 AAACCGTTGCATCAAATGAATCCAACTCGGTTGGCTTTCATCCGCTCGACCTTATGCAGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAACCGTTGCATCAAATGAATCCAACTCGGTTGGCTTTCATCCGCTCGACCTTATGCAGG 462
Query 418 CATTTCAGTAAGGATCCGAGTTCTGCTAAGCCTTTTGAAGGACTGAGATTTATCGATATA 477
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 463 CACTTCAGTAAGGATCCGAGTTCTGCTAAGCCTTTTGAAGGACTGAAATTTATCGATATA 522
Query 478 GGTTGCGGTGGCGGACTACTTTCTGAGCCTCTAGCACGGATGGGAGCAACTGTCACAGGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GGTTGCGGTGGCGGACTACTTTCTGAGCCTCTAGCACGGATGGGAGCAACTGTCACAGGA 582
Query 538 GTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCTGATATGGATCCAGTT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GTTGATGCTGTTGATAAGAATGTCAAAATTGCTCGTCTTCACGCTGATATGGATCCAGTG 642
Query 598 ACTTCAACGATTGAATACCTATGTACTACAGCAGAAATGCTAGCGGATGAAGGCAGGAAG 657
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 643 ACTTCAACGATTGAATACTTATGTACTACAGCAGAAAAGCTAGCGGATGAAGGCAGGAAG 702
Query 658 TTTGATGCTGTTCTCTCTTTAGAGGTCATCGAGCATGTAGCCAACCCTGCAGAGTTCTGC 717
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 703 TTTGATGCTGTTCTTTCTTTAGAGGTCATCGAGCATGTAGCAAACCCTGCAGAGTTCTGT 762
Query 718 AAGTCGTTGTCAGCATTGACCATCCCCAATGGGGCTACAATACTTTCTACAGTTAATCGC 777
|||||||||||||||||||| |||||||| ||||||||| ||||||||||| | ||||||
Sbjct 763 AAGTCGTTGTCAGCATTGACTATCCCCAACGGGGCTACAGTACTTTCTACAATCAATCGC 822
Query 778 ACTATGCGAGCATATGCATCAACCATTGTTGGAGCAGAGTACATTCTACGTTGGCTTCCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ACTATGCGAGCATATGCATCAACCATTGTTGGAGCAGAGTACATTCTACGTTGGCTTCCT 882
Query 838 AAAGGCACACATCAGTGGTCAAGTTTTGTAACTCCCGAAGAACTGAGTATGATATTACAA 897
||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 883 AAAGGCACACACCAGTGGTCAAGTTTTGTAACTCCTGAAGAAATGAGTATGATATTACAA 942
Query 898 CATGCTTCAGTCGATGTGAAAGAGATGGCTGGATTTGTGTACAACCCAATAACAGGAAGA 957
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 943 CGTGCTTCAGTCGATGTGAAAGAGATAGCTGGATTTGTGTACAACCCAATAACAGGAAGA 1002
Query 958 TGGTTATTGTCAGATGATATTAGTGTCAACTATATTGCTTATGGGACGAAAAGGAAGGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGGTTATTGTCAGATGATATTAGTGTCAACTATATTGCTTATGGGACGAAAAGGAAGGAT 1062
Query 1018 CTTGGAGACATATAATCAATCGTTCCAAATCGTCTTTTTCTGCCTATCTGCTTCTGAGTT 1077
|||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||
Sbjct 1063 CTTGGAGACATATAATCAATCGTTCCAAGTCGTGTTTCTCTGCATATCTGCTTCTGAGTT 1122
Query 1078 ACAACTCTAGTTTATGCTTTAAAAAGTAGGTACTCTGGAAGTTGGTTAGGACGAGGACAG 1137
|||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1123 ACAACTCTAGTTCATGCTTTAAAAACTAGGTACTCTGGAAGTTGCTTAGGACGAGGACAG 1182
Query 1138 TAGTT 1142
|||||
Sbjct 1183 TAGTT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5