BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482014
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30940.2 | Symbols: | Protein kinase superfamily protein | ... 1958 0.0
> AT2G30940.2 | Symbols: | Protein kinase superfamily protein
| chr2:13168533-13170285 FORWARD LENGTH=1362
Length=1362
Score = 1958 bits (1060), Expect = 0.0
Identities = 1218/1294 (94%), Gaps = 12/1294 (1%)
Strand=Plus/Plus
Query 9 GCTTGAGATCTTACTGTTTCACACTCTCATTGATTCATCATCTTTATCACCACAAAGACT 68
||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 12 GCTAGAGATTTTACTGATTCACACTCTTATTGATTCATCATCTTTATCACCACAAAGACT 71
Query 69 CAGAGTGATGAACAGAATCATATCATCACAAGGAACAGAATTGATCCAGCACAAACTCTC 128
|||||| ||||| ||||||||||||||||||||| |||| |||||| | || ||||||||
Sbjct 72 CAGAGTAATGAATAGAATCATATCATCACAAGGATCAGATTTGATCAAACAAAAACTCTC 131
Query 129 TCAACACACTTCCTTCTTCGGCATCAAGCTATGGATCCTCATTACAGCTTCTGCCTCCAT 188
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 132 TCAACACACTTCCTTCTTCGGCATCAAGCTATGGATCCTCATCACAGCTTCTGCCTCCAT 191
Query 189 AGCCTTCCTCTTAGTTCTCATTATTTCTGTCCTCCTCTGTTTCATCTTTCACAGGAGAAG 248
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 192 AGCCTTCCTCTTAGTTCTGATAATTTCTGTCCTCCTCTGTTTCATATTTCACAGGAGAAG 251
Query 249 GTGTAGACAAGAACCATTCAGACTAAGATCAAAGCTTTGTCTGCCTTTATCACACATTCC 308
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 252 ATGTAGCCAAGAACCATTCAGACTAAGATCAAAGCTTTGTCTACCTTTATCACACATTCC 311
Query 309 CATAAATAACAAACGACAGATTCCATACAACCGTTGCGGCGATGATGTAGAGAGCCAGAG 368
| ||| |||||||| ||||||||| || |||||||||||||| ||| |||||||||||||
Sbjct 312 CTTAACTAACAAACAACAGATTCCTTATAACCGTTGCGGCGACGATATAGAGAGCCAGAG 371
Query 369 AATCTCTCAGGTTGGTTGGTCCTCTGCTCATCTTTCCTACTACACACGCAGCTTCTCCTC 428
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 372 AATCTCTCAGGTTGGTTGGTCCTCTGCTCGTCTTTCCTACTACACACGCAGCTTCTCCTC 431
Query 429 TACCGGCAGCTTTGGAAGCTTCAATGTGTTTACGTTCTTGGAGATCAAGAACGTGACAGA 488
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 432 TACCGGCAGCTTTGGAAGCTTCAATGTGTTTACGTTCATGGAGATCAAGAACGTGACAGA 491
Query 489 TAGTTTTGCAGATTATAATCTGATTACTACAGGAGATTCTTCAACGGTGTATCGCGGAAT 548
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 492 TAGTTTTGCAGATGATAATGTGATTACTAAAGGAGATTCTTCAACGGTGTATCGCGGAAT 551
Query 549 CTTGATGGGTACAGTCACTGTTGCTGTCAAACGGTTC-TTCCCCA-TCCATCAA-AGGTA 605
||||||||||||||||||||||||||||||||| ||| |||| | | || | |||||
Sbjct 552 CTTGATGGGTACAGTCACTGTTGCTGTCAAACGATTCCTTCCA-AGTA-AT-AGCAGGTA 608
Query 606 TGAAGATAAAGATTTCATAACAAAAGCTGAGATGATTGCAAATGTTAGACACAAGAATGT 665
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGAAGATAAAGATTTCATTACAAAAGCTGAGATGATTGCAAATGTTAGACACAAGAATGT 668
Query 666 TGTGAGACTTCTTGGATACTGCATTGAAGGAGATGAGAGGGTTCTTGTTTATGAATACGC 725
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 669 TGTGAGACTCCTTGGATACTGCATAGAAGGAGATGAGAGGGTTCTTGTATATGAATACGC 728
Query 726 TGAGAAAGGCGATTTGCACGAATGGCTTCATGGATCTTCCGGGAGAAATCGGCCTCTGAC 785
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 729 TGAGAAAGGCGATTTGCACGAATGGCTTCATGGATCTGCAGGAAGAAATCGGCCTCTGAC 788
Query 786 CTGGAGGAAGAGGATGAAGATCATTCAAGGAGTAGCAAAAGGCCTCGCGTATTTTCACGA 845
||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 789 TTGGAGAAAGAGGATGAAGATCATTCAAGGAGTAGCAAAAGGCCTTGCGTATATTCACGA 848
Query 846 GGACATAGAACCAAAGATCACTCATCAAGACATAAGACCAAGCAAGATTCTTCTTGATTA 905
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GGACATCGAACCAAAGATCACTCATCAAGACATAAGACCAAGCAAGATTCTTCTTGATTA 908
Query 906 TCAATGGAACCCTAAGATACTTGATGTTGGATTCATTGGTCACAGTGATATTCCAACTTC 965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TCAATGGAACCCTAAGATACTTGATGTTGGATTCATTGGTCACAGTGATATTCCAACTTT 968
Query 966 GATTCCTTCACCTAGTAATCTGGATGAGAAAATCGACGTTTATTCCTTCGGGACTTTGAT 1025
||||||||||||| ||||| |||||||||||||||||||||||||||| |||| | ||||
Sbjct 969 GATTCCTTCACCTGGTAATATGGATGAGAAAATCGACGTTTATTCCTTTGGGAATATGAT 1028
Query 1026 AATGGAGCTTGTCTCTGGAAGAGTCTCTGTAGACCAAAGTTCACCACATGT-----TT-A 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1029 AATGGAGCTTGTCTCTGGGAGAGTCTCTGTAGACCAAAGTTCACCACATGTGAGAGTTTA 1088
Query 1080 TCTAGTGGACTGGATCAAAGAGATGGTGGCAAATCATATGATAGTAGATGTTCTTGATCC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TCTAGTGGACTGGATCAAAGAGATGGTGGCAAATCATATGATAGTAGATGTTCTTGATCC 1148
Query 1140 TAGCCTTCCCGAATTTCCTACAATAAAGGAACTCAAACGGATTGTGTTGATTGCCTTGCG 1199
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1149 TAGTCTTCCCGAATTTCCTACAATAAAGGAACTCAAACGGATTGTGTTGATTTCCCTGCG 1208
Query 1200 CTGTGTCGATCTCGAGGTAGAAGAGAGACCTAAAATGGGAGATGTGATTCACATGCTCCA 1259
||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTGTGTTGATCCCGAGCTAAAAGAGAGACCTAAAATGGGAGATGTGATTCACATGCTCCA 1268
Query 1260 ACCACATGACTTGCTGTTGAGTAACAATGTAATA 1293
|||||||||||||||| ||| |||||||| ||||
Sbjct 1269 ACCACATGACTTGCTGCTGAATAACAATGCAATA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5