BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482017
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60590.2 | Symbols: | DHBP synthase RibB-like alpha/beta do... 1003 0.0
> AT5G60590.2 | Symbols: | DHBP synthase RibB-like alpha/beta
domain | chr5:24357025-24358750 FORWARD LENGTH=1215
Length=1215
Score = 1003 bits (543), Expect = 0.0
Identities = 632/676 (93%), Gaps = 2/676 (0%)
Strand=Plus/Plus
Query 30 GCGATGAATCTTTCCACGAGGCTCGCTGAGAAACTTCCTGGAATCTTACCGGCGCCGTCG 89
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 39 GCGATGAATCTCTCCACGAGGCTCGCTGAAAAACTTCCCGGAATCTTACCGGCGCCGTCT 98
Query 90 TCTCCTATCCTGCGTAAAGGAGTCTCCGAGTTAAGATTCTTTTCAATTGCTAACCATAGT 149
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 99 TCTCCTCTCCTGCGTAAAGGAGTCTCCGAGTTAAGATGCTTTTCAATTGCTAACCAAAGT 158
Query 150 AGAAGATTGAGATGGGGACTACAGAAGAAGATGGTATGGAGTTTGGAGAGAGCTGAAACC 209
|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||
Sbjct 159 AGAAGATTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACC 218
Query 210 TGTGTAGTTAGCAATTCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCT 269
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TGTGTAGTGAGCAAATCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCT 278
Query 270 ATTGAAGCAATTAAATCCGATAAAGTTATCGCTGTCCCAACCGATACTCTTTATGGCTTC 329
|||||||| || |||||||| |||||||| ||||| || |||||||| ||||||||||||
Sbjct 279 ATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTC 338
Query 330 GCTTGTGATGCTTGTTCTTTAGAAGCGGTTAACCGAATATATGAGATCAAAGGGCGTAAA 389
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 339 GCTTGTGATGCTTGTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCGTAAA 398
Query 390 CTTACAAGCCCTTTAGCCATATGCGTTGGTGATGTATTCGATATCAAGAGAGTTGCTACT 449
||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 399 CTTACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATCAAGAGAGTGGCTACC 458
Query 450 ACGAA-TCACTTACCTCACGGTTTACTTGATTCTCTCTTGCCCGGTCCAGTCACTCTCGT 508
|| || ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 459 AC-AAGTCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTCTTGT 517
Query 509 ACTTCATCGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCGGGGATTGGTACTAT 568
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 518 ACTTCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCAGGGATTGGTACTAT 577
Query 569 TGGAATACGGGTTCCTGATTGTGAATTCATTAGAGAAGTATTGAGAGGTTCGGGCAGTGT 628
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 578 TGGAGTACGGGTTCCAGATTGTGAATTCATTAGAGAAGTATCGAGAGGTTCGGGCAGTGT 637
Query 629 GTTAGCTCTTACAAGTGCTAATCTAAGTGGGGACAGAAGCAGCGTTTGTGTTAATGATTT 688
||| |||||||||||||||||| |||| || || |||||||||||||||||||| |||||
Sbjct 638 GTTGGCTCTTACAAGTGCTAATTTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTT 697
Query 689 TGAGAAACTTTGGCAG 704
|||||| |||||||||
Sbjct 698 TGAGAATCTTTGGCAG 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5