BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482018
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30950.1 | Symbols: VAR2, FTSH2 | FtsH extracellular proteas... 3738 0.0
AT1G06430.1 | Symbols: FTSH8 | FTSH protease 8 | chr1:1960058-1... 2193 0.0
> AT2G30950.1 | Symbols: VAR2, FTSH2 | FtsH extracellular protease
family | chr2:13174321-13177223 FORWARD LENGTH=2337
Length=2337
Score = 3738 bits (2024), Expect = 0.0
Identities = 2198/2283 (96%), Gaps = 8/2283 (0%)
Strand=Plus/Plus
Query 1 TCTTTCTCTCCATCTTCCATATTTGCAGAGCTCGAGATTCTCCTTCCTTATACAACTCTC 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 14 TCTTTCTCTCCATCCTCCATATTTGCAGAGCTCGAGATTCTCCTTCCCTATACAACTCTC 73
Query 61 ATCTGTAATCGATACAGATGGCAGCTTCATCAGCTTGTCTTGTGGGAAATGGATTGTCAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 74 ATCTGTAATCGATACAGATGGCAGCTTCATCAGCTTGTCTTGTGGGAAATGGTTTGTCAG 133
Query 121 TGAACACAACGACCAAACAGAGGTTAAGTAAAAACTTTTCCAGCAGACAGACAAACTTTT 180
|||||||||| ||||||||||||||||||||| | |||||| |||||||||||| |||||
Sbjct 134 TGAACACAACAACCAAACAGAGGTTAAGTAAACATTTTTCCGGCAGACAGACAAGCTTTT 193
Query 181 CTTCAGTGATTAGGACATCTAAGGTTAATGTAGTGAAGGCTTCTTTGGATGTGAAGAAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 194 CTTCAGTGATTAGGACATCTAAGGTTAATGTAGTGAAGGCTTCTTTGGATGGGAAGAAGA 253
Query 241 AACATGAAGGAAGAAGAGATTTTCTTAAAATCTTGTTAGGAAATGCCGGGGTCGGTTTGG 300
| || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 254 AGCAAGAAGGAAGAAGAGATTTTCTCAAAATCTTGTTAGGAAATGCTGGGGTCGGTTTGG 313
Query 301 TTGCAAGTGGGAAAGCAAATTCAGAGGAACAAGCG-GTTTCGTCGTCTAGGATGTCGTAT 359
|||||||||||||||||||| | || ||||||| | ||||| ||||| ||||||||||||
Sbjct 314 TTGCAAGTGGGAAAGCAAATGCTGATGAACAAG-GTGTTTCTTCGTCGAGGATGTCGTAT 372
Query 360 TCTAGGTTTCTAGAGTATTTGGATAAGGATAGGGTGAATAAAGTTGATTTGTATGAGAAT 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TCTAGGTTTCTAGAGTACTTGGATAAGGATAGGGTGAATAAAGTTGATTTGTATGAGAAT 432
Query 420 GGGACTATAGCTATTGTGGAAGCTGTTTCTCCTGAGTTGGGTAACCGGGTTGAGCGTGTT 479
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 433 GGGACTATAGCTATTGTGGAAGCTGTTTCTCCTGAATTGGGTAACCGGGTTGAGAGAGTA 492
Query 480 CGTGTTCAGCTACCGGGATTAAGTCAGGAGCTTCTCCAGAAGCTTAGGGCCAAGAATATT 539
||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 493 CGTGTTCAGCTACCGGGTTTAAGTCAAGAGCTTCTACAGAAGCTTAGGGCTAAGAATATT 552
Query 540 GATTTTGCAGCACATAATGCTCAGGAAGACCAAGGTTCTGTGTTATTCAACTTGATTGGT 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 553 GATTTTGCAGCACATAATGCTCAGGAAGATCAAGGTTCTGTGTTATTCAACTTGATTGGT 612
Query 600 AATCTTGCTTTCCCGTTGCTTTTGATTGGTGGTTTGTTCCTTCTTTCGAGACGCTCTGGT 659
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 613 AATCTTGCTTTCCCGGCGCTTTTGATTGGTGGTTTGTTCCTTCTTTCGAGACGGTCTGGT 672
Query 660 GGTGGAATGGGTGGACCTGGTGGTCCTGGTAACCCACTTCAGTTTGGTCAGTCCAAAGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GGTGGAATGGGTGGACCTGGTGGTCCTGGTAACCCACTTCAGTTTGGTCAGTCCAAAGCA 732
Query 720 AAGTTCCAAATGGAACCTAACACTGGTGTAACATTTGATGATGTTGCTGGAGTTGATGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AAGTTCCAAATGGAACCTAACACTGGTGTAACATTTGATGATGTTGCTGGAGTTGATGAA 792
Query 780 GCAAAGCAGGATTTCATGGAAGTGGTGGAGTTTCTGAAGAAACCCGAGAGATTCACTGCG 839
|||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 793 GCAAAGCAAGATTTCATGGAAGTGGTGGAGTTTTTGAAGAAACCTGAGAGATTCACTGCG 852
Query 840 GTTGGTGCCAAGATTCCGAAAGGTGTTCTCCTTATTGGTCCCCCTGGTACTGGGAAAACC 899
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 853 GTTGGTGCCAAGATCCCGAAAGGTGTTCTTCTTATTGGTCCTCCTGGTACCGGGAAAACC 912
Query 900 CTTTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CTTTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCT 972
Query 960 GAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAA 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 973 GAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCGAGAGTCCGTGATCTTTTCAAGAAA 1032
Query 1020 GCCAAGGAGAACGCTCCTTGCATTGTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GCCAAGGAGAACGCTCCTTGCATTGTCTTTGTAGATGAAATAGATGCTGTTGGTAGGCAA 1092
Query 1080 AGAGGAACCGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGAGGAACCGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACCCTCAATCAGCTCCTA 1152
Query 1140 ACTGAGATGGATGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ACTGAGATGGATGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGA 1212
Query 1200 GCAGACATTCTTGATTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGGTAAGTGTT 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGGTAAGTGTT 1272
Query 1260 GACGTTCCAGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCATGCCGGTAATAAGAAG 1319
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1273 GACGTTCCTGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCATGCCGGCAATAAGAAG 1332
Query 1320 TTCGACAATGATGTCTCACTTGAAATAATAGCAATGAGAACACCCGGATTTAGCGGAGCA 1379
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1333 TTCGACAATGATGTTTCACTTGAAATAATAGCAATGAGAACACCTGGATTTAGCGGAGCA 1392
Query 1380 GATCTCGCTAACCTCTTGAATGAAGCTGCTATATTGGCCGGAAGGCGAGCGCGGACGTCG 1439
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1393 GATCTCGCTAACCTCTTGAATGAGGCTGCTATATTGGCCGGAAGGCGAGCACGGACATCG 1452
Query 1440 ATATCATCTAAAGAGATTGATGACTCCATTGATAGAATAGTTGCTGGCATGGAAGGAACA 1499
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1453 ATATCATCTAAAGAGATTGATGACTCCATTGATAGAATCGTTGCTGGCATGGAAGGAACA 1512
Query 1500 GTGATGACCGACGGGAAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGTCATGCAGTG 1559
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1513 GTGATGACCGATGGCAAGAGCAAAAGCTTGGTAGCTTACCATGAAGTTGGTCATGCAGTG 1572
Query 1560 TGTGGAACATTGACTCCAGGACATGATGCTGTGCAAAAGGTAACGTTGATACCAAGAGGC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGTGGAACATTGACTCCAGGACATGATGCTGTGCAAAAGGTAACGTTGATACCAAGAGGC 1632
Query 1620 CAAGCAAGAGGTCTGACTTGGTTCATTCCGTCAGATGACCCGACACTCATCTCCAAGCAA 1679
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1633 CAAGCAAGAGGTCTGACTTGGTTCATTCCATCAGATGACCCGACACTCATCTCCAAGCAG 1692
Query 1680 CAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTCGAGCCGCTGAAGAAATCATCTTT 1739
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1693 CAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAGGGCCGCTGAAGAAATCATCTTT 1752
Query 1740 GGTGAG-CCTGAGGTGACTACTGGCGCAGTTGGTGACTTGCAACAGATCACCGGTTTGGC 1798
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1753 GGTGATTCC-GAGGTGACTACTGGCGCAGTTGGTGACTTACAACAGATCACCGGTTTGGC 1811
Query 1799 TAGACAGATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCGTTGATGGATTC 1858
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1812 TAGACAGATGGTAACAACATTTGGAATGTCTGATATTGGACCATGGTCTTTGATGGATTC 1871
Query 1859 ATCAGCACAAAGTGATGTCATCATGAGAATGATGGCAAGAAACTCCATGTCTGAGAAGCT 1918
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 TTCGGCACAAAGCGATGTCATCATGAGAATGATGGCAAGAAACTCCATGTCTGAGAAGCT 1931
Query 1919 TGCAGAAGACATTGATTCTGCAGTGAAGAAACTATCCGACAGTGCATATGAGATAGCTCT 1978
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1932 TGCAGAAGACATTGATTCTGCGGTGAAGAAACTATCAGACAGTGCATATGAGATAGCTCT 1991
Query 1979 AAGCCACATAAGGAACAATCGTGAAGCCATGGATAAGCTCGTTGAAGTGCTTCTCGAGAA 2038
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 AAGCCACATAAAGAACAATCGTGAAGCCATGGATAAGCTCGTTGAAGTGCTTCTCGAGAA 2051
Query 2039 AGAAACAATTGGCGGTGACGAATTCAGGGCAATTCTTTCTGAGTTTACTGAAATCCCACC 2098
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 2052 AGAAACTATTGGCGGTGACGAATTCAGGGCAATTCTTTCCGAGTTTACTGAGATCCCCCC 2111
Query 2099 AGAAAATCGGGTTCCTTCTTCAACAAC-ATCAACTCCAGCATCAGCACCAACACCAGCTT 2157
||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2112 GGAAAACCGAGTTCCTTCTTCAACAACGA-CAACTCCAGCATCAGCACCAACACCAGCTG 2170
Query 2158 CCGTCTAAGTAAGAAATTTGTATACTTGTGATACTTATAATTTTTCTGTAAATTTATCTG 2217
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 CTGTCTAAGTAATCAATCTGTATACTTGTGATACTTATAATTTTTCTGTAAATTTATCT- 2229
Query 2218 TCAAACTTACACTCTAGAAATGTGATACTATCTCAAAATTTAGTAGCAAGTAAATGTT-A 2276
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2230 TCAAACTTACACTCTAGAAATGTGATACTATCTCAAAATTTAGTAACAAGTAAATGTTTA 2289
Query 2277 AAA 2279
|||
Sbjct 2290 AAA 2292
> AT1G06430.1 | Symbols: FTSH8 | FTSH protease 8 | chr1:1960058-1963011
REVERSE LENGTH=2255
Length=2255
Score = 2193 bits (1187), Expect = 0.0
Identities = 1770/2044 (87%), Gaps = 69/2044 (3%)
Strand=Plus/Plus
Query 187 TGATTAGGACATCTAAGGTTA-ATGTAGTGAAGGCTTCTTTGGATGTGAAGAAGAAACAT 245
||| |||||||||||| |||| | || ||||||||||||||||| || |||||||||||
Sbjct 122 TGA-TAGGACATCTAAAGTTACA-GTTGTGAAGGCTTCTTTGGA--TG-AGAAGAAACAT 176
Query 246 GAAGGAAGAAGAGATTTTC-TTAAAATCTTGTTAGGAAA---TGC--C-GGGGTCGGTTT 298
||||| ||||||| |||| ||||| |||| ||||||| ||| | || || |||||
Sbjct 177 GAAGGGAGAAGAG-GTTTCTTTAAACTCTTACTAGGAAACGCTGCTGCTGGAGTTGGTTT 235
Query 299 GGTTGCAAGTGGGAAA-GCAAATTCAGAGGAACAA-G-C----GGTTTCGTCGTCTAGGA 351
| |||||||| ||||| || ||| |||| |||||| | | |||||| |||||||| |
Sbjct 236 GCTTGCAAGT-GGAAACGCTAATGCAGACGAACAAGGACAAGGGGTTTCTTCGTCTAGAA 294
Query 352 TGTCGTATTCTAGGTTTCTAGAGTATTTGGATAA-GGATAGGG-TGAATAAAGTTGATTT 409
|||| ||||||||||| ||||||||||| || || ||| |||| || | ||||| |||||
Sbjct 295 TGTCTTATTCTAGGTTCCTAGAGTATTTAGACAAGGGA-AGGGTTG-AGAAAGTAGATTT 352
Query 410 GTATGAGAATGGGACTATAGCTATTGTGGAAGCTGTTTCTCCTGAGTTGGGTAACCGGGT 469
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 353 GTATGAGAATGGGACTATAGCTATTGTGGAGGCCGTTTCTCCTGAGTTGGGTAACCGGAT 412
Query 470 TGAGCGTGTTCGTGTTCAGCTACCGGGATTAAGTCAGGAGCTTCTCCAGAAGCTT-AGGG 528
| ||||||| ||||| |||||||| ||||| ||||||||||||||||||||| || ||||
Sbjct 413 TCAGCGTGTACGTGTGCAGCTACCTGGATTGAGTCAGGAGCTTCTCCAGAAG-TTGAGGG 471
Query 529 CCAAGAATATTGATTTTGCAGCACATAATGCTCAGGAAGACCAAGGTTCTGTGTTATTCA 588
| |||||||||||||| |||||||||||||||||||| |||||||||||| || |||
Sbjct 472 CTAAGAATATTGATTTCGCAGCACATAATGCTCAGGAGGACCAAGGTTCTCCAATACTCA 531
Query 589 ACTTGATTGGTAATCTTGCTTTCCC-GTTGCTTTTGATTGGTGGTTTGTTCCTTCTTTCG 647
|||||||||| |||||||| ||||| ||| |||||||||| |||||||||||||| |||
Sbjct 532 ACTTGATTGGGAATCTTGCATTCCCTGTT-ATTTTGATTGGCGGTTTGTTCCTTCTCTCG 590
Query 648 AGACGCT-CTGGTGGTGGAATGGGTGGACCTGGTGGTCCTGG-TAACCCACTTCAGTTTG 705
||| | | || ||||||||||||||| |||||||||||||| | |||||| || |||
Sbjct 591 AGAAGATCCT-CTGGTGGAATGGGTGGCCCTGGTGGTCCTGGCT-TCCCACTCCAAATTG 648
Query 706 GTCAGTCCAAAGCAAAGTTCCAAATGGAACCTAACACTGGTGTAACATTTGATGATGTTG 765
||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct 649 GTCAGTCGAAAGCAAAGTTTCAGATGGAACCAAACACTGGTGTAACTTTTGATGATGTTG 708
Query 766 CTGGAGTTGATGAAGCAAAGCAGGATTTCATGGAAGTGGTGGAGTTTCTGAAGAAACCCG 825
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 709 CTGGAGTCGATGAAGCCAAGCAAGATTTCATGGAAGTGGTGGAGTTTCTGAAGAAGCCTG 768
Query 826 AGAGATTCACTGCGGTTGGTGCCAAGATTCCGAAAGGTGTTCTCCTTATTGGTCCCCCTG 885
|||| |||||||||||||||||| ||| || ||||||||||| ||| ||||||| ||||
Sbjct 769 AGAGGTTCACTGCGGTTGGTGCCCGGATCCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTG 828
Query 886 GTACTGGGAAAACCCTTTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCTTTCTTCT 945
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 829 GTACCGGGAAAACCCTGTTGGCAAAAGCCATTGCTGGTGAAGCTGGTGTGCCCTTCTTTT 888
Query 946 CCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCCTCAAGAGTCCGTG 1005
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 889 CCATCTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGGTGTTGGTGCATCAAGGGTCCGCG 948
Query 1006 ATCTTTTCAAGAAAGCCAAGGAGAACGCTCCTTGCATTGTCTTT-GTAGATGAAATAGAT 1064
|||||||||| |||||||| || || ||||| |||||||| ||| || ||||||||||||
Sbjct 949 ATCTTTTCAAAAAAGCCAAAGAAAATGCTCCATGCATTGT-TTTCGTGGATGAAATAGAT 1007
Query 1065 GCTGTTGGTAGGCAAAGAGGAACCGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACC 1124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1008 GCTGTTGGTAGGCAAAGAGGAACTGGAATTGGTGGAGGTAATGATGAAAGAGAACAGACC 1067
Query 1125 CTCAATCAGCTCCTAACTGAGATGGATGGTTTTGAAGGTAACACTGGTGTTATCGTAGTT 1184
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1068 CTTAATCAGCTCCTGACTGAGATGGATGGTTTTGAGGGTAACACTGGTGTTATCGTAGTT 1127
Query 1185 GCTGCAACCAATAGAGCAGACATTCTTGATTCTGCTTTGTTGAGGCCAGGACGGTTTGAC 1244
||||||||||| ||||||||||||||||| || |||||| | || ||||| || ||||||
Sbjct 1128 GCTGCAACCAACAGAGCAGACATTCTTGACTCCGCTTTGCTAAGACCAGGGCGTTTTGAC 1187
Query 1245 CGGCAGGTAAGTGTTGACGTTCCAGACGTTAAGGGGAGAACAGATATTCTCAAGGTTCA- 1303
||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1188 CGGCAGGTATCTGTTGACGTTCCAGACGTTAAGGGAAGAACAGATATACTCAAGGTTCAC 1247
Query 1304 TGCCGGTAATAAGAAGTTCGACAAT-GATGTCTCACTTGAAATAATAGCAATGAGAACAC 1362
| | || |||||||| || || || | ||| ||||||||| ||||||| ||||||||||
Sbjct 1248 T-CGGGGAATAAGAAATTTGA-AAGCGGTGTTTCACTTGAAGTAATAGCCATGAGAACAC 1305
Query 1363 CCGGATTTAGCGGAGCAGATCTCGCTAACCTCTTGAATGAAGCTGCTATATTGGCCGGAA 1422
| |||||||||||||| ||||| || ||||||||||| || ||||| |||||||||||
Sbjct 1306 CTGGATTTAGCGGAGCTGATCTTGCAAACCTCTTGAACGAGGCTGCCATATTGGCCGGCC 1365
Query 1423 GGCGAGCGCG-GAC-GTCGATATCATCTAAAGAGATTGATGACTCCATTGATAGAATAGT 1480
| || | | ||| | | |||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 1366 GCCGTG-GAAAGACTG-CAATATCATCAAAAGAGATTGATGACTCAATTGACAGAATTGT 1423
Query 1481 TGCTGGCATGGAAGGAACAGTGATGACCGACGGGAAGAGCAAAAGCTTGGTTGCTTACCA 1540
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1424 AGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTACCA 1483
Query 1541 TGAAGTTGGTCATGC-AGTGTGTGGAACATTGACTCCAGGACATGATGCTGTGCAAAAGG 1599
||||||||| ||||| | | |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1484 TGAAGTTGGCCATGCCA-TATGTGGAACATTGACTCCAGGGCATGATGCTGTTCAAAAGG 1542
Query 1600 TAACGTTGATACCAAGAGGCCAAGCAAGAGGTCTGACTTGGTTCATTCCGTCAGATGACC 1659
| |||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1543 TCACGTTGATACCACGAGGCCAGGCTAGAGGTCTGACTTGGTTCATTCCCTCAGATGACC 1602
Query 1660 CGACACTCATCTCCAAGCAACAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTCGAG 1719
| || || |||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct 1603 CAACTCTAATCTCCAAACAGCAACTCTTTGCAAGAATTGTTGGTGGACTCGGTGGTAGAG 1662
Query 1720 CCGCTGAAGAAATCATCTTTGGTGAGCCTGAGGTGACTACTGGCGCAGTTGGTGACTTGC 1779
| || |||||| |||||||||||||| |||||||||||||||| |||||| |||||||||
Sbjct 1663 CTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTTGC 1722
Query 1780 AACAGATCACCGGTTTGGCTA-GACAGATGGTAACAACATTTGGAATGTCTGATATTGGA 1838
||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || |||
Sbjct 1723 AACAGATCACCGGTTTGGCTAAG-CAGATGGTGACAACATTTGGGATGTCTGAAATCGGA 1781
Query 1839 CCATGGTCGTTGATGGATTCATCAGCA-CAAAGTGATGTCATCATGAGAATGATGGCAAG 1897
||||||||| | ||||||||||| | | ||||| |||||||| ||||| |||||||||||
Sbjct 1782 CCATGGTCGCTAATGGATTCATCGG-AGCAAAGCGATGTCATTATGAGGATGATGGCAAG 1840
Query 1898 AAACTCCATGTCTGAGAAGCTTGCAGAA-GACATTGATTCTGCAGTGAAGAAACTATCCG 1956
|||||| |||||||||||||||||| || || |||||| | || ||||||| | |||| |
Sbjct 1841 AAACTCAATGTCTGAGAAGCTTGCA-AATGATATTGATACAGCGGTGAAGACATTATCAG 1899
Query 1957 ACAGTGCATATGAGATAGCTCTAAGCCACATAAGGAACAATCGTGAAGCCATGGATAAGC 2016
||| || || ||||||||| | ||||| || || |||||||||||||||||||| |||
Sbjct 1900 ACAAAGCGTACGAGATAGCTTTGAGCCAGATTAGAAACAATCGTGAAGCCATGGACAAGA 1959
Query 2017 TCGTTGAAGTGCTTCTCGAGAAAGAAACAATTGGC-GGTGACGAATTCAGGGCAATTCTT 2075
| |||||| | ||||| |||||||| || || | | || || |||||| | ||||| ||
Sbjct 1960 TTGTTGAAATACTTCTTGAGAAAGAGACTAT-GTCAGGCGATGAATTCCGAGCAATCCTA 2018
Query 2076 TCTGAGTTTACTGAAATCCCACCAGAAAATCGGGTTCCTTCTTCAACAACATCAACTCCA 2135
||||| || || ||||||||||| ||||| || ||| ||||||||||| || | |
Sbjct 2019 TCTGAATTCACAGAAATCCCACCTGAAAACCGTGTTGCTTCTTCAACA---TC--C---A 2070
Query 2136 GCATCAGCACCAACACCAGCTTCCGTCTAAGTAAGAAA--TTTGTATACT-TGTG-ATAC 2191
||||| ||||||||||||| || |||| ||||||| | |||| || || |||| |||
Sbjct 2071 -CATCAACACCAACACCAGCGTCTGTCTGAGTAAGAGACCTTTGAAT-CTCTGTGTATA- 2127
Query 2192 TTAT 2195
||||
Sbjct 2128 TTAT 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113101827885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5