BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482020
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30970.1 | Symbols: ASP1 | aspartate aminotransferase 1 | ch... 2495 0.0
> AT2G30970.1 | Symbols: ASP1 | aspartate aminotransferase 1 |
chr2:13178849-13181931 FORWARD LENGTH=1701
Length=1701
Score = 2495 bits (1351), Expect = 0.0
Identities = 1519/1598 (95%), Gaps = 19/1598 (1%)
Strand=Plus/Plus
Query 1 CAACTTGTGCGACTCTCCTTCGTCCTCATCTGCC--AAACTTCGTACGAGTCGCTACTtc 58
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 CAACTTGTGCGACTCTCCTTCGTCCTCATCTGCCAAAAACTTCGTACGAGTCGCTA---- 70
Query 59 tctctctctctctctATATAAACTCCTTTCGATTATCTTTTCTCTG-TGTTTTGACGTTA 117
|| ||||||||| |||||||||||||| | | | |||||| |||| | |||||||||||
Sbjct 71 -CT-TCTCTCTCTATATATAAACTCCTTACCACTCTCTTTT-TCTGATTTTTTGACGTTA 127
Query 118 ACCGATAGAAACAGAGCgag--agagagagagagTTATGGCTATGGCGATGATGATCCGA 175
| ||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||
Sbjct 128 AGAGATAGAAACAGAGAGAGATAGAGAGATAGAGTTATGGCTTTGGCGATGATGATCCGA 187
Query 176 AACGCAGCTTCCAAGCGAGCAATGACTCCGATCTCCGGTGATTTCGGTGGTTTGAGATCT 235
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 188 AACGCAGCTTCGAAGCGAGGAATGACTCCGATCTCCGGTCATTTCGGTGGTTTGAGATCT 247
Query 236 ATGTCTTCATGGTGGAAGAGCGTTGAGCCTGCTCCTAAAGATCCAATCCTCGGAGTTACC 295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 248 ATGTCTTCATGGTGGAAGAGCGTTGAGCCTGCTCCTAAAGATCCGATCCTCGGAGTTACC 307
Query 296 GAAGCTTTTCTCGCTGATCCTAGTCCTGAAAAAGTTAATGTTGGTGTGGGAGCGTATCGT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 308 GAAGCTTTTCTCGCTGATCCTAGTCCTGAAAAAGTTAATGTTGGTGTGGGAGCATATCGT 367
Query 356 GATGATAATGGAAAGCCTGTTGTCTTGGAATGTGTCAGAGAAGCTGAGCAAAGGCTTGCT 415
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 368 GATGATAATGGGAAGCCTGTTGTCTTGGAATGTGTCAGAGAAGCTGAGAAAAGGCTTGCT 427
Query 416 GGGAGCACTTTCATGGAGTACCTTCCTATGGGAGGGAGTGCCAAAATGGTGGACCTAACA 475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 428 GGGAGCACTTTCATGGAGTACCTTCCTATGGGAGGAAGTGCCAAAATGGTGGACCTAACA 487
Query 476 TTGAAGCTTGCCTATGGGGACAATAGTGAATTTATCAAAGATAAAAGAATCGCTGCAGTT 535
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 488 TTGAAGCTTGCCTATGGGGACAATAGTGAATTTATCAAAGATAAAAGAATTGCTGCAGTT 547
Query 536 CAGACTCTGTCTGGCACTGGAGCCTGCCGACTGTTTGCAGACTTTCAGAAACGTTTCTGT 595
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| | |
Sbjct 548 CAGACTCTGTCTGGCACTGGAGCCTGCCGGCTCTTTGCAGACTTCCAGAAACGTTTTTCT 607
Query 596 CCTGGTTCACAGATCTACATTCCTGTACCAACCTGGTCCAACCACCACAACATCTGGAGA 655
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 608 CCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAACCACCACAACATCTGGAAA 667
Query 656 GATGCACAAGTCCCTCAAAAGACATATCACTACTATCATCCAGAAACCAAGGGCTTGGAT 715
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 668 GATGCACAAGTCCCTCAAAAGACATATCATTACTATCATCCAGAAACCAAGGGCTTGGAT 727
Query 716 TTCTCAGCATTGATGGATGATGTGAAGAATGCTCCGGAAGGCTCATTCTTCCTTCTTCAT 775
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 TTCTCAGCATTGATGGATGATGTGAAGAATGCTCCGGAAGGGTCATTCTTCCTTCTTCAT 787
Query 776 GCTTGTGCTCATAATCCTACTGGAGTTGACCCTACAGAGGAACAATGGAGAGAGATATCA 835
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 788 GCTTGTGCTCATAATCCTACTGGAGTAGACCCTACAGAGGAACAATGGAGAGAGATATCA 847
Query 836 CAGCTATTCAAGGCT-AAAAGTCATTTTGCATTCTTCGATATGGCGTACCAAGGTTTTGC 894
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 848 CAGCTATTCAAGGCTAAAAAG-CATTTCGCATTCTTCGATATGGCTTACCAAGGTTTTGC 906
Query 895 TAGTGGAGATCCAGCGAGAGATGCCAAGTCCATCAGGATCTTTCTTGAAGATGGTCATCA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TAGTGGAGATCCAGCGAGAGATGCCAAGTCCATCAGGATCTTTCTTGAAGATGGTCATCA 966
Query 955 TATTGGAATTTCTCAGTCCTATGCCAAAAACATGGGACTCTACGGCCAAAGGGTGGGATG 1014
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 967 TATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATG 1026
Query 1015 TCTCAGCGTGCTTTGTGAAGATGCAAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAACA 1074
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 1027 TCTCAGTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCAGCA 1086
Query 1075 GCTAGCTAGACCAATGTACAGCAACCCACCTTTACATGGTGCGCAACTGGTCTCAACCAT 1134
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1087 GCTAGCTAGACCAATGTACAGCAACCCACCTTTGCATGGTGCTCAGCTGGTCTCAACCAT 1146
Query 1135 TCTTGAAGACCCAGAGTTAAAGAGTCTGTGGCTAAAGGAAGTTAAGGTCATGGCTGATCG 1194
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1147 TCTTGAAGACCCAGAGTTAAAGAGTCTGTGGCTAAAAGAAGTTAAGGTCATGGCTGATAG 1206
Query 1195 AATCATTGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTATC 1254
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1207 GATCATCGGCATGAGAACTACTTTGCGAGAAAGCCTTGAGAAGTTAGGATCGCCTTTGTC 1266
Query 1255 ATGGGAGCATGTTACCAAGCAGATTGGAATGTTCTGCTACAGTGGGCTAACACCAGAACA 1314
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1267 ATGGGAGCACGTTACCAAACAGATTGGAATGTTCTGCTACAGTGGGTTAACACCAGAACA 1326
Query 1315 GGTAGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAATGGCCGTATCAGTAT 1374
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1327 GGTTGACCGCTTAACAAGCGAATATCACATCTATATGACCCGTAACGGCCGTATCAGTAT 1386
Query 1375 GGCTGGTGTTACGACAGGAAACGTGGGATACCTTGCGAATGCTATACATGAAGTCACCAA 1434
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GGCTGGTGTTACAACAGGAAACGTGGGATACCTTGCGAATGCTATACATGAAGTCACCAA 1446
Query 1435 GTCATCTTAATTTGTTTACTTACATGTTTCAGCCAAACATACAAATTTTGTTTGAAGATT 1494
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1447 GTCATCTTAAATCATTTACTTACATGTTTCAGCCAAACATACAAATTTTGTTTGAAGAGT 1506
Query 1495 CAATAAGACAGGAGGCAAGATTTGTACTTCTGCAATTGTTTTTGTGGGAACTGAAAGTTT 1554
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1507 CAATAAGACAGGAGGCTAGATTTGTACTTCTGCAATTGGTTTTGTGGGAACTGAAAGTTT 1566
Query 1555 ACCCATACCATAAACAGTAATTTGTCAGCGCATTTTTT 1592
||||||| | | ||||||||| | ||||||||||||
Sbjct 1567 ACCCATA--A-A--CAGTAATTTATTAGCGCATTTTTT 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5