BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482023
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30990.1 | Symbols: | Protein of unknown function (DUF688) ... 2569 0.0
> AT2G30990.1 | Symbols: | Protein of unknown function (DUF688)
| chr2:13187583-13190283 REVERSE LENGTH=2103
Length=2103
Score = 2569 bits (1391), Expect = 0.0
Identities = 1824/2019 (90%), Gaps = 86/2019 (4%)
Strand=Plus/Plus
Query 106 ATGTTAATGGGGAGCTTCATGATGGAAGAGAAGCAATTAGATTTCAACCGCCCGCTTATA 165
||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||
Sbjct 129 ATGTTAATGGGGAGCTTAATGATGGAAGAGAAGCAACTGGATTTCAACCGTCCGCTTATA 188
Query 166 TCCGTTAGAAGGCCTGCACAAACTTCAGAATCTGAGAGCAAAACAAGATCTTTTGATGCA 225
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 189 TCCATTAGACGGCCTACACAAACTTCAGAATCTGAGAGCAAAACAAGATCTTTTGATTCA 248
Query 226 GCAAATAGCAAGATTCCTCCTTCTCCACCGGTTTACAAGTCTGATATCAAGTCAGGTCCT 285
| || | || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 249 GTAACCAACATGATTCCTCCTTCTCCACCAGTTTACAAGTCTGATATCAAGTCAGGTCCT 308
Query 286 GTGAGAAATCCAGGAACTGTTCCTTTTCAATGGGAACATAAGCCAGGAAAGCCGAAAGAC 345
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 309 GTGAGAAATCCAGGAACTGTTCCTTTTCAATGGGAACATAAGCCTGGAAAGCCAAAAGAC 368
Query 346 GAAAGGAAACCGGTTTTACAAAGTTTTGTAGAGCCACATTTTGTGCCAAAGCTTCCTCCT 405
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GAAAGGAAACCGGTTTTGCAAAGTTTTGTAGAGCCACATTTTGTGCCAAAGCTTCCTCCT 428
Query 406 GGTAGAGAGC--G-AGTAGAGTTAGTGAGGAAACCTG-AA--ACTAGAGCTGATCACCAG 459
|||||||||| | ||||||||||| ||||||||||| || ||| ||||||||||||||
Sbjct 429 GGTAGAGAGCGAGTAGTAGAGTTAGGGAGGAAACCTGAAAGTACTGGAGCTGATCACCAG 488
Query 460 ACCAAAACTGTATCGTCTTCGGATAAAAATCTTGTGGAGGATGCAAAGAGTTATAGTTCT 519
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 489 ACCAAAACTGTATCGTCTTCGGATAAATATCTTGTGGAGGATGCAAAGAGTAATAGTTCT 548
Query 520 CGG--T-atgatgatgatgatgatagtgatgGTACTTATCTTGATGCAACTGATACACTT 576
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CGGTATGATGATGATGATGATGATAGTGATGGTACTTATCTTGATGCAACTGATACACTT 608
Query 577 TCAAGAACTGAGTCATTCTT-TTTCAACTGTAGTGCTGTTAGTGGTGTGAGCGGTTTGGA 635
|||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||
Sbjct 609 TCAAGAACTGAGTCATTCTTCTTT-AACTGTAGTGCTGTTAGTGGTGCGAGTGGTTTGGA 667
Query 636 TGGTTCCGGGATACTAGTAGAGCCATTTGGAACTTTATCGAGTGATCGACAAACTCAGGA 695
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 TGGTTCAGGGATACTAGTAGAGCCATTTGGAACTTTATCGACTGATCGACAAACTCAGGA 727
Query 696 TCTAATGATGGGGAGATTCTTGCCTGCAGCTAAAGCTTTGACTTCAGAAACACCTCCACA 755
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 728 TCTAATGATGGGGAGATTCTTGCCTGCAGCTAAAGCTTTGACTTCAGAATCACCTCCACA 787
Query 756 TCTTACTAGGAAACCGCCTAAACCAGAAGAACCGACTAAGCAGTTGATGAAGAAGGTAGT 815
|||| |||||||||| ||||||||||||| | || | | | ||||| | || |
Sbjct 788 TCTTGCTAGGAAACCACCTAAACCAGAAG-A---AC----C-G--G-TGAAGCA-GTTG- 833
Query 816 ACTGGTAAAGGAGAAACAGAACAAAGTTGAGCAAAATCCGTATCGGTTTCATCATTCGTC 875
| | | ||| |||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 834 A-T-G--AAGAAGAAACAGAACAAAGTGGAGCAAAATCCGTATCGGTTTCGTCATTCGCC 889
Query 876 TGATCAAGAAGAGGAAGATGAAAATACAAGCAGCATG--GG-TTCTAGTATTTGTGGATT 932
|||||||||||||||||||| ||||| |||||||||| || ||| || ||||||||||
Sbjct 890 TGATCAAGAAGAGGAAGATGGAAATATAAGCAGCATGATGGCGTCTGGTGTTTGTGGATT 949
Query 933 AGTTCCTCAGA-TATGCTTGAGAAGCTCTTTAGGACTATTGAATCCGGTTCCATCTGTGA 991
| | ||||| | | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 950 ACTCCCTCA-ACTCTGCTTGAGAAGCTCTTTGGGACTATTGAATCCGGTTCCATCTGTGA 1008
Query 992 GAATGCAAGC-ACAAAGAGCTGTTTCTGTTCGTCGTATGCGGTCTAAGTATCAAGATTCT 1050
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1009 GAATGC-AGCAACAAAGAGCTGTTTCTGTTCGTCGTATGCGGTCTAAGTACCAAGATTCT 1067
Query 1051 ACACCTTGTAATGAAAGTCAGGACAAGAAAACCTATGAAACTGTGAATGAAGATAAGAGG 1110
|||||| |||||||| ||| ||||| | || |||||||||||||||
Sbjct 1068 GCACCTTCTAATGAAACTCATAACAAG-----C-----AA-----AATGAAGATAAGAGG 1112
Query 1111 AAGTTGAAGCTAAATGGATCAGTTGCACAAGTG-CATTCTCAAGATGAGTCATTATCAGT 1169
||||||||||||| || |||||||||| ||| | | |||||||| |||||||||||||||
Sbjct 1113 AAGTTGAAGCTAATTGAATCAGTTGCAAAAGGGTC-TTCTCAAGGTGAGTCATTATCAGT 1171
Query 1170 ATCTTCTATTCCACAAGGAAAGGAAAAACTCGAGAGC-TTCTGCACCGCTTCACGCACTA 1228
||||||||| ||||||||||| || |||||||||| | || ||||||||||||||| ||
Sbjct 1172 ATCTTCTATACCACAAGGAAAAGAGAAACTCGAGAACGTT-GGCACCGCTTCACGCAGTA 1230
Query 1229 AAACCAGCAAAAACTTTGGTGAGCTCTTGGCTAGTGATGATAATACATGGGAACCTTCGT 1288
||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1231 AAATCAGTAAAAACTTTGGTGAGCTCTTGGCTAGTGATGAGAATACATGGGAACCTTCAT 1290
Query 1289 CTGAGACTCTTGTGGCTGAGAAAACTCTGTATGTAGACACCGTGCATTC-AGTAGATAAG 1347
| ||||||| |||||| |||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1291 CCGAGACTCCTGTGGCAGAGAAAACTCTGTATGTAGACATTGTGCA-TCTAGTAGATAAG 1349
Query 1348 AAGGTACAAGAAGAGTCCAAGAAGCAATCTTTATCAAAAGACTATCCTTCACTAGACATC 1407
|||||||||||||||||||||||||| || ||| ||||| | |||||||||||||||
Sbjct 1350 AAGGTACAAGAAGAGTCCAAGAAGCAGCCTATATTGAAAGAGTCTCCTTCACTAGACATT 1409
Query 1408 GTTCCTGTAAAAGATGAAGAAGCTGCTATCTCGCAGCCTAAAAGCATTGAGCAAAAGAAT 1467
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1410 GTTCCTGTAAAAGATGAAGAAGCTGATATCTCGCAGCCTAAAAGCATTGAGCAAGAGAAT 1469
Query 1468 GGTAACAGAGATGAGGATTTCACTAAATTCTCTAGTCAGAAAGTTGAAGAATGTCCTG-- 1525
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1470 GGTAACAGAGATGAGGATTTCACTAAATTCTCAAGTCAGAAAGTTGAAGAATGTCCTGAT 1529
Query 1526 -ATCAAGCTATTATTGCACTGCCAGAATCCAATGTGGTAGAGATTACAAAGGAGAAGAAG 1584
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1530 CATCAAGCTATTGTTGCACTGCCAGAATCCGATGTGGTAGAGATTACAAAGGAGAAGAAG 1589
Query 1585 ATTGATCTTGAAGTCCAGTTGCAGGGAATCACAACAAATCTTGAAAGCTCAAGGCTTCAT 1644
|||||||||||||| |||||||| | ||||||||||||| ||||||| ||||||||||||
Sbjct 1590 ATTGATCTTGAAGTTCAGTTGCAAGTAATCACAACAAATATTGAAAGTTCAAGGCTTCAT 1649
Query 1645 CATCGTTCAACTTATCACATTGTTCCTCCACCACCATTACCAAAAGCTCCTTCAGATTCT 1704
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 CATCGTTCAAGTTATCTCATTGTTCCTCCACCACCATTACCAAAAGCTCCTTCAGATTCT 1709
Query 1705 TGGTTAAAGCGCACATTACCAACGATACCATCAAAGAACAACTCATTCGCATGGTTACAG 1764
||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 1710 TGGTTAAAGCGTACATTACCAACAATACCACCAAAAAACAACTCATTCGCATGGTTACAG 1769
Query 1765 TCTCTTGGCACTGATGAT-A-A-TCACTTCACCAAGACTCAAGCTAATCCAAAGTGGGAA 1821
|||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||
Sbjct 1770 TCTCTTGGCACTGATGATGATAATCACTTTACCAAGACTCAAGCTAATCCAAAGTGGGAA 1829
Query 1822 ACTATGGTCAAAACGTCCAATACAGAACAAGGTTTTGTTTGCTTCTCCAAGGAAACACTA 1881
|||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||
Sbjct 1830 ACTATGGTCAAAACGTCCAATACACAGCAAGGGTTTGTGTGCTTCTCCAAGGAAACACTA 1889
Query 1882 AACTCTATACCAGAGTCATAGCAAGACCAAAACAAA-TA---A-TG-----AA-GAAGG- 1929
||| |||||||||||||||||||||||||||||||| | | || || ||||
Sbjct 1890 AACCCTATACCAGAGTCATAGCAAGACCAAAACAAAATTCTCACTGGTGGTAATGAAGAA 1949
Query 1930 --TGTAAA-TTTTTCACACCAAATTACATGTAAATTT-CAACAATTAATAAAAAAGGGAT 1985
|||||| |||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 1950 ACTGTAAAATTTTTCACACCAAATTACATGTAAATTTTCAACAAT-AA-AGAA--GGGAT 2005
Query 1986 GGGCCAACAAAGTTTGGGT-TCTTTGTCTTTAGTTATTTGTGTAAATCTGAATCAAAA-G 2043
| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||||| |
Sbjct 2006 GAGCCAATAAAGTTTGGGTAT-TTTGTCTTTAACTATTTGTGTAAATCTGAATCAAAAAG 2064
Query 2044 ATTCCATAATAAAGAGAAAGCTATGGAGATAATTGTCTT 2082
||||||| ||||||||||||| |||||||||| ||||||
Sbjct 2065 ATTCCATGATAAAGAGAAAGCAATGGAGATAAATGTCTT 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5