BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482029
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31040.1 | Symbols: | ATP synthase protein I -related | chr... 1947 0.0
> AT2G31040.1 | Symbols: | ATP synthase protein I -related | chr2:13208906-13211085
REVERSE LENGTH=1314
Length=1314
Score = 1947 bits (1054), Expect = 0.0
Identities = 1212/1285 (94%), Gaps = 23/1285 (2%)
Strand=Plus/Plus
Query 2 TCATAA-CATCCACAAGAAACTCATCCATGGCGATTCTTAGTTACATCTCAGCAACATCA 60
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 TCATAAGC-TCCACAAAAAACTCATCCATGGCGATTCTTAGTTACATCTCAGCAACATCA 106
Query 61 ACTACACCACCGATTCCTCAAGATCAATCACCCAATTCTCGTCTACCAACCAAAATCATT 120
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 107 ACCACACCACCAATTCCTCAAGATCAATCTCCCAATTCTCGTCTACCAACCAAAATCATT 166
Query 121 CTACCCAATAAGAAACCGGAGAAATGGTCCACCGGCGTTGCTCCCGGAGAGTACGGTGGT 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 167 CTACCCAATAAGAAACCTGAGAAATGGTCCACCGGAGTTGCTCCCGGAGAGTACGGTGGT 226
Query 181 CCTCCGACCACCACCAAGCTTCGAAAGTACTGGGGAGGAGAAAAAGAAGATCCCATTACT 240
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 227 CCTCCGACTACCACCAAGCTCCGAAAGTACTGGGGAGGTGAAAAAGAAGATCCCATTACT 286
Query 241 TCCACAGACTTAATCTGGAACAGAGATTTTATGGATCAAATGAAGAAATTGTTCGATTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 287 TCCACAGACTTAATCTGGAACAGAGATTTTATGGATCAAATGAAGAAATTGTTTGATGAT 346
Query 301 CCTGATGATTCTTCTCTCGACCCATCTCCCTCAAAGGAAGAGTCTTCTGGGTTTCTGAGC 360
||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 347 CCTAATGATTCTTCTCTCGACCCATCTCCTTCAAAGGAAAAGTCTTCTGGGTTTCTGAGC 406
Query 361 TTTAGTAGAGTTATGAGTCTTGACAGTATGGATGTTGATTTGAGCAAAGAGCTTGCAGT- 419
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 407 TTTAGCAGAGTTATGAGTCTTGACAGTATGGATGTTGATTTAAGTAAAGAGCTTGCA-TC 465
Query 420 GTCTTCTAAACCCGTTGTGAAAGATCTTCTTGACACCTCCAAGTTAGAAGCTAAAAAGCA 479
|||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 466 GTCTTCTAAATCCGTTGTGAAAAATCGTCTTGACACCTCCAAGTCAGAAGCTAAAAAGCA 525
Query 480 AATGAGTAAGGCTATTGTGTCTCCTAAATGGAAGCTGGCACCAACACGTCGTGAGCAAGA 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 526 AATGAGTAAGGCTATTGTGTCTCCTAAATGGAAGCTGGCACCTACACGTCGTGAGCAAGA 585
Query 540 GAAATGGGATAGAGCAACTAAGGCTGCAACTGGTGGCAGTGATGTGATGTTTAGGGAGCT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GAAATGGGATAGAGCAACGAAGGCTGCAACTGGTGGCAGTGATGTGATGTTTAGGGAGCT 645
Query 600 GAGGCGGCCACGTGGTGACCCAGAAGTACAGGCTGCTAAAGACAGGGAACAATATTTCAA 659
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 646 GAGACGGCCACGTGGTGACCCAGAAGTACAAGCTGCTAAAGACAGGGAACAATATTTTAA 705
Query 660 GCTGAAAAATAAGATACAGGTTCTCACACTCGGTATTGGCGGTGTTGGTTTAGTCTCAGC 719
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 706 GCTGAAAAATAAGATTCAGGTTCTCACACTCGGTATTGGTGGTGTTGGTTTAGTCTCAGC 765
Query 720 TTATATCTCATACACCCCAGAGATAGCACTTAGTTTTGGTGCTGGCTTGATGGGTTCACT 779
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 766 TTATATCTCATACACCCCAGAGATAGCACTTAGTTTTGGTGCTGGCTTGTTGGGTTCACT 825
Query 780 TGCATATATGAGGATGCTTGGTAACTCTGTAGATGCCATGGCAGATGGAGCCAGAGGAGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TGCATATATGAGGATGCTTGGTAACTCTGTAGATGCCATGGCAGATGGAGCCAGAGGAGT 885
Query 840 TGTCAAAGGTGCAGCTAACCAGCCACGGTTACTAGTCCCCGTTGTGTTGGTTATGATATT 899
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TGCCAAAGGTGCAGCTAACCAGCCACGGTTACTAGTCCCCGTTGTGTTGGTTATGATATT 945
Query 900 CAATAGATGGAACGCAATACTTGTTCCTGAGTATGGATTCATGCATTTGGAGTTGATACC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CAATAGATGGAACGCAATACTTGTTCCTGAGTATGGATTCATGCATTTGGAGTTGATACC 1005
Query 960 AATGTTGGTTGGGTTCTTTACTTACAAAATTGCTACGTTCTTTCAAGCTATAGAAGAAGC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AATGTTGGTTGGGTTCTTTACTTACAAAATTGCTACGTTCTTTCAAGCTATAGAAGAAGC 1065
Query 1020 CATTTCCATTACTACCCAAAAACCCGAATCA-TCATCTCCTGACATAGAGGCCAGTGATT 1078
||| ||||||||||| ||||||||||||||| || ||||| |||| | ||||||||||||
Sbjct 1066 CATCTCCATTACTACTCAAAAACCCGAATCAATC-TCTCCAGACACACAGGCCAGTGATT 1124
Query 1079 AATAAGGTCGATGTCAGTGTTGTAAGAAATGTAATTTATACACAAAAGCGTTAATGTAAT 1138
||||||||| | |||||||||||||||||||||||| | ||||| ||| |||||||||||
Sbjct 1125 AATAAGGTCAAGGTCAGTGTTGTAAGAAATGTAATTAA-ACACAGAAGTGTTAATGTAAT 1183
Query 1139 AAAAACTTAATAAGTAATAACTCAGAAATTCATTCATAGCAGCAAATCACCAAGAGAT-G 1197
||||||| ||||| |||| ||| ||||||||| ||||||||||||||||||| |
Sbjct 1184 AAAAACT-AATAA-------CTCATAAACTCATTCATACCAGCAAATCACCAAGAGATAG 1235
Query 1198 CACAACTAAGAACATATAAAGCAAATGCATAAAGAGT-AAGACATAGAAAGTTAACTGAA 1256
| | ||| |||||||||||||||||||| ||||||| || |||||||||||||| |||
Sbjct 1236 -ATAGCTA-GAACATATAAAGCAAATGCAGAAAGAGTGAA-ACATAGAAAGTTAA-TGAC 1291
Query 1257 ATTATGATATTTTCAGACCAAACCG 1281
|| ||| ||||| |||||||||||
Sbjct 1292 -TT-TGAAATTTTTAGACCAAACCG 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5