BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482033

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31081.1 | Symbols: CLE4 | CLAVATA3/ESR-RELATED 4 | chr2:132...   551    2e-156


> AT2G31081.1 | Symbols: CLE4 | CLAVATA3/ESR-RELATED 4 | chr2:13238047-13238600 
FORWARD LENGTH=554
Length=554

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 465/538 (86%), Gaps = 42/538 (8%)
 Strand=Plus/Plus

Query  1    CCAAAGACTAGCTTGAAGA-GGATTAGTACAACAATATAAATAACAATTAACAGAATATG  59
            ||||||||||||||||||| |||||||||   |||||| ||||||||||||| |||||||
Sbjct  1    CCAAAGACTAGCTTGAAGAGGGATTAGTA-GGCAATATTAATAACAATTAACTGAATATG  59

Query  60   GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGATCTCGGTGCATCAA  119
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  60   GCAAGTTTCAAGTTATGGGTTTGCCTTATATTGCTTCTACTCGAGTTCTCGGTGCATCAA  119

Query  120  TGCCGACCACTGGTCGCGGAAGAGAGCCGGTCTGATTCAGGGAACATAAGAAAGATTATG  179
            |||||||||||||| |||||||||||||  || |||||||| ||||||||||||||||||
Sbjct  120  TGCCGACCACTGGTTGCGGAAGAGAGCCCTTCAGATTCAGGTAACATAAGAAAGATTATG  179

Query  180  AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCCAAAGGCGGCGAAACGGTT  239
            ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct  180  AGGGAACTTCTCAAAAGATCAGAAGAGCTGAAGGTAAGATCGAAAGACGGCCAAACGGTT  239

Query  240  CTAGGCAATACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC  299
            ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CTAGGC---ACCCTTGATTCAAAGCGGCTCAGCCCTGGTGGGCCGGACCCTAGACATCAC  296

Query  300  T-AAA-GA-GA-T-G---TGT-A--GTTT--T----TA-T--AAC--CT--T-TC-GGTG  333
            | ||| || || | |   | | |   |||  |    || |  |||   |  | || | ||
Sbjct  297  TAAAATGATGAGTAGTTTTATAACCTTTTGGTGAGGTATTCAAACTTGTAATATCAGCTG  356

Query  334  A-GGTATTG-A-AACTTGTAATTGGTGTAACTCTAAGGTTACCATCTTATCAACATTGA-  389
            | || |||| | ||   || |||||||||||||||||| ||||||||| | |||||||| 
Sbjct  357  AGGGCATTGCATAA-GCGTTATTGGTGTAACTCTAAGGCTACCATCTTGTTAACATTGAG  415

Query  390  GTCAAATT-AATCTTGAAGTATGTTCATCTAAAGTGAAGCGTACTAGATAATGTGCTTGT  448
            || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  416  GTGAAATTAAATCTTGAAGTATGTTCATCTAAGGTGAAGCGTACTAGATAATGTGCTTGT  475

Query  449  TTTTATTTAATCGGTTCTCTTTTGTGCTTCT-AAAATTATGAGAAATTGGCATTTATC  505
            || |||| ||  | || |||||||||||||  ||||||||||| ||||| ||||||||
Sbjct  476  TTGTATT-AA--GTTT-TCTTTTGTGCTTCCCAAAATTATGAGGAATTGTCATTTATC  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5