BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482035
Length=539
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31083.1 | Symbols: CLE5 | CLAVATA3/ESR-RELATED 5 | chr2:132... 702 0.0
AT2G31085.1 | Symbols: CLE6 | CLAVATA3/ESR-RELATED 6 | chr2:132... 340 6e-93
> AT2G31083.1 | Symbols: CLE5 | CLAVATA3/ESR-RELATED 5 | chr2:13252219-13252765
FORWARD LENGTH=547
Length=547
Score = 702 bits (380), Expect = 0.0
Identities = 499/553 (90%), Gaps = 21/553 (4%)
Strand=Plus/Plus
Query 1 ATCATACTCTCTCGATATAATCTCATTTTGCATCTCTCTCTTAACCCCCACCCCTCAAAA 60
||||||||||||| |||| |||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1 ATCATACTCTCTCAATATCATCTCATTTTGCATCTCTCTCTCAACTCCCACCCCTCCAAA 60
Query 61 GTCACC-----TTTCTTCCTCTACTATGGCGACTTTGATCCTTAAGCATTCTCTGATCAT 115
||||| |||||||||||| |||||||||||||||||| ||||| |||| |||||
Sbjct 61 TTCACCTTTAATTTCTTCCTCTATTATGGCGACTTTGATCCTCAAGCAAACTCTAATCAT 120
Query 116 ACTCCTAATCATATTTTCATCACAAACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATA 175
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATCCTCCGTTCATA 180
Query 176 TCGTGTCGTGTCCATGAGCAATGTGGATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGA 235
||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAACTCGGGTTTGA 240
Query 236 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAGTTCCGACAGGGTTTC 300
Query 296 ACCGGGAGGTCCCGATCCGCAACACCATTAAATGGTCG-TCACATATATAAATACTTTAC 354
||| |||||||||||||| |||||||||| |||| ||| | || || |||||||||||||
Sbjct 301 ACCCGGAGGTCCCGATCCACAACACCATTGAATGATCGAT-ACCTAAATAAATACTTTAC 359
Query 355 CAAAGATCCAAGCACAAATAATGTGAG-GACGGATCCATC-ATCCATGCAAGTCAT-AT- 410
| |||||||||||||||||||||||| || ||| ||| ||| ||||||||||| ||
Sbjct 360 CGAAGATCCAAGCACAAATAATGTGACTGATTCATC-ATCCATCTATGCAAGTCATCATA 418
Query 411 -GATTATCGCTATTTCTATGTTTT-CTTTCCTCTCTTTGTTTTTCATAAAACCTTACTAT 468
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 TGATTATCGCTCTTTCTATGTTTTTCTTTCCTCTCTTTGTTTTTCATAAAACCTTAC--- 475
Query 469 ACGTACAATTTTGTTGTATCAAGGTTTTGGTATTCTTGTACCAC-C-TTACCTTGATACA 526
|||||| |||||||||||||||||||||||| |||||||||| | ||||||| |||||
Sbjct 476 --GTACAACTTTGTTGTATCAAGGTTTTGGTATCCTTGTACCACACATTACCTTAATACA 533
Query 527 CCAAGCTTTTTCT 539
|||||||||||||
Sbjct 534 CCAAGCTTTTTCT 546
> AT2G31085.1 | Symbols: CLE6 | CLAVATA3/ESR-RELATED 6 | chr2:13254178-13254706
FORWARD LENGTH=529
Length=529
Score = 340 bits (184), Expect = 6e-93
Identities = 378/466 (81%), Gaps = 36/466 (8%)
Strand=Plus/Plus
Query 81 ATGGCGACTTTGATCCTTAAGCATTCTCTGATCATACTCCTAATCATATTTTCATCACAA 140
||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| ||| |
Sbjct 86 ATGGCGAATTTGATCCTTAAGCAATCTCTAATCATACTCCTAATCATATATTCAACACCA 145
Query 141 ACCTTAAGATCTCAAGCTCGAATCCTCCGTTCATATCGTGTCGTGTCCATGAGCAATGTG 200
| ||| || ||||||||||||||||||||| ||||||| | ||||| || || ||
Sbjct 146 ATCTTGAGTTCTCAAGCTCGAATCCTCCGTACATATCGCCCCACAACCATGGGCGATATG 205
Query 201 GATAGTCAGGTTCTCCTACGTGAACTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATA-A 259
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 206 GATAGTCAGGTTCTCCTACGTGAACTCGGGATTGATCTCTCTAAGTTCAAAGGTCA-AGA 264
Query 260 CGAGAGGCGATTTTTAGTG-AGTTCCGACAGGGTTTCACCGGGAGGTCCCGATCCGCAAC 318
|||||| || ||||||||| | |||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 265 CGAGAGACGGTTTTTAGTGGA-TTCCGAAAGGGTTTCTCCGGGGGGTCCTGATCCACAAC 323
Query 319 ACCATTAAATGGTCGTCAC--ATATATAAATACTTTACCAAAGATCCAAGCACAAATAAT 376
|||||| | || || | || ||||||| |||||||||| |||||| ||||||| ||| |
Sbjct 324 ACCATTGACTGATCTTTACCGATATATATATACTTTACCGAAGATCGAAGCACACATA-T 382
Query 377 GTGAGGAC-G-GATCCATCATCCATGCAAGTCA-TATGATTATCG-CTATTT-CTATGTT 431
| || | || | | |||||||||||||| | | | ||||| | |||| | |||
Sbjct 383 ---A--ACTGTGA-C--TGATCCATGCAAGTCAATTTAAATATCGTC-ATTTAC-ATG-- 430
Query 432 TTCTTTCCTCTCTTTGTTTTTCATAAAACCTTACTATACGTACAATTTTGTTGTATCAAG 491
|||| ||| ||| ||||||||||| | || | ||| || |||||||||||||||
Sbjct 431 --CTTT--TCT-TTTCTTTTTCATAAATC-TTCCC-TAC--AC--TTTTGTTGTATCAAG 479
Query 492 GTTTTGGTATTCTTGTACCA-CCTTACCTTGATACACCAAGCTTTT 536
|||||||||||||||||| ||||| ||| | ||| |||| ||||
Sbjct 480 ATTTTGGTATTCTTGTACCTTCCTTATCTTTAAACATCAAGGTTTT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25820351558
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5