BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482036

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31085.1 | Symbols: CLE6 | CLAVATA3/ESR-RELATED 6 | chr2:132...   514    3e-145
  AT2G31083.1 | Symbols: CLE5 | CLAVATA3/ESR-RELATED 5 | chr2:132...   342    1e-93 


> AT2G31085.1 | Symbols: CLE6 | CLAVATA3/ESR-RELATED 6 | chr2:13254178-13254706 
FORWARD LENGTH=529
Length=529

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 371/414 (90%), Gaps = 13/414 (3%)
 Strand=Plus/Plus

Query  1    ATCATActctctcagcttcatctctttctctctctctctcaatctctGCAA-ATCCCACA  59
            |||||||||||||| |||||  ||  |||||||||||||||||||||  || ||||||||
Sbjct  1    ATCATACTCTCTCAACTTCA--TC--TCTCTCTCTCTCTCAATCTCT-TAAGATCCCACA  55

Query  60   AATCACTTTTCTTCTTCTTATTCACCTTTTATGGCGAATTCGATCCTTAAGCAATCTCTA  119
            | |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct  56   AGTCACTTTTCTTCTTCTTAATCACCTTTAATGGCGAATTTGATCCTTAAGCAATCTCTA  115

Query  120  ATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATCCTCCGT  179
            ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct  116  ATCATACTCCTAATCATATATTCAACACCAATCTTGAGTTCTCAAGCTCGAATCCTCCGT  175

Query  180  ACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAACTCGGG  239
            ||||||| ||||||  || ||||| |||||||||||||||||||  ||||||||||||||
Sbjct  176  ACATATCGCCCCACAACCATGGGCGATATGGATAGTCAGGTTCTCCTACGTGAACTCGGG  235

Query  240  ATTGATCTCTCTAAGTTCAAAGGT-AATAGCGAAAGGCGGTTTTTAGTGGATTCCGAAAG  298
            |||||||||||||||||||||||| || | ||| || |||||||||||||||||||||||
Sbjct  236  ATTGATCTCTCTAAGTTCAAAGGTCAAGA-CGAGAGACGGTTTTTAGTGGATTCCGAAAG  294

Query  299  GGTTTCACCAGGAGGCCCTGACCCACAACACCATT-ACTGATCTTTACAGATATATATA-  356
            |||||| || || || ||||| ||||||||||||| |||||||||||| |||||||||| 
Sbjct  295  GGTTTCTCCGGGGGGTCCTGATCCACAACACCATTGACTGATCTTTACCGATATATATAT  354

Query  357  -CTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCATGCAAGTC  409
             |||||||| |||||||  ||  |||| |||| |||||||||||||||||||||
Sbjct  355  ACTTTACCGAAGATCGAAGCA--CACATATAACTGTGACTGATCCATGCAAGTC  406


> AT2G31083.1 | Symbols: CLE5 | CLAVATA3/ESR-RELATED 5 | chr2:13252219-13252765 
FORWARD LENGTH=547
Length=547

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 341/412 (83%), Gaps = 28/412 (7%)
 Strand=Plus/Plus

Query  1    ATCATActctctcagct-tcatctc-tttct-c-tctctctctcaatctctGCAAATCCC  56
            ||||||||||||||  | ||||||| ||| | | |||||||||||| |||  |  | |||
Sbjct  1    ATCATACTCTCTCA-ATATCATCTCATTT-TGCATCTCTCTCTCAA-CTC--C-CACCCC  54

Query  57   -ACAAA-TCACTTTTCTTCTTCTTATTCAC-CTTTTATGGCGAATTCGATCCTTAAGCAA  113
              |||| |||| |||  | |||   ||| | || ||||||||| || |||||| ||||||
Sbjct  55   TCCAAATTCACCTTTAAT-TTC---TTC-CTCTATTATGGCGACTTTGATCCTCAAGCAA  109

Query  114  TCTCTAATCATACTCCTAATCATATTTTCATCACCAATCTTTAGTTCTCAAGCTCGAATC  173
             |||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct  110  ACTCTAATCATACTCCTAATCATATTTTCATTACAAACCTTAAGTTCTCAAGCTCGAATC  169

Query  174  CTCCGTACATATCACCCCACGGCCGTGGGCAATATGGATAGTCAGGTTCTTTTACGTGAA  233
            |||||| ||||||   ||  | || |||||||||||||||||||||||||  ||| ||||
Sbjct  170  CTCCGTTCATATCGTGCCGTGTCCATGGGCAATATGGATAGTCAGGTTCTCCTACATGAA  229

Query  234  CTCGGGATTGATCTCTCTAAGTTCAAAGGTAATAGCGAAAGGCGGTTTTTAGTG-GATTC  292
            |||||| ||||||||||||||||||||||| ||| ||| ||||| ||||||||| | |||
Sbjct  230  CTCGGGTTTGATCTCTCTAAGTTCAAAGGTCATAACGAGAGGCGATTTTTAGTGAG-TTC  288

Query  293  CGAAAGGGTTTCACCAGGAGG-CCCTGACCCACAACACCATT-ACTGATCTTTACAGATA  350
            ||| ||||||||||| ||||| ||| || ||||||||||||| | |||||  |||  | |
Sbjct  289  CGACAGGGTTTCACCCGGAGGTCCC-GATCCACAACACCATTGAATGATCGATACCTAAA  347

Query  351  TATATACTTTACCGGAGATCGATCCAAGCACAAATAATTGTGACTGATCCAT  402
            || ||||||||||| | |  |||||||||||||||||| ||||||||| |||
Sbjct  348  TAAATACTTTACCG-A-A--GATCCAAGCACAAATAAT-GTGACTGATTCAT  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5